Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3239 ATGGCGAAATCACCCGAAACCGAACTCCCACTCAAAGCTTTTGGTTGGGCTGCTAGAGACACTTCTGGCACCCTCTCTCCCTTTCATTTCTCCAGAAGGGAAAATGGCGATGATGATGTAAGTGTCAAAATTCTATATTGTGGAGTTTGTCATTCTGATCTACACACTCTCAAGAACGATTGGGGTTTCACTACTTACCCTGTTGTTCCTGGGCATGAAATTGTTGGCGTTGTGACAAAAGTTGGAATCAATGTGAAAAAATTCAGAGTGGGTGATAACGTTGGTGTTGGTGTAATTGTCGAGTCTTGTCAGACTTGTGAGAATTGCAATCAAGATTTGGAGCAGTACTGTCCTAAACTTGTATTTACCTATAACTCTCCTTATAAAGGGACACGAACCCATGGTGGCTATTCTGATTTTGTGGTTGTTCACCAGCGGTATGTAGTTCAGTTTCCTGACAACTTACCTCTTGACGCTGGTGCTCCACTTCTGTGTGCCGGGATCACCGTGTATAGCCCGATGAAATATTATGGTATGACTGAGCCAGGCAAACATTTGGGAGTGGCAGGGCTTGGTGGGTTAGGCCATGTTGCAATCAAATTCGGTAAAGCATTCGGGCTGAAGGTTACTGTTATTAGTACCTCTCCAAACAAGGAAACCGAGGCCATTGACAAACTTGGTGCTGATTCTTTCCTTGTTTCCAAAGACCCTGAAAAAATGAAGGCTGCTATGGGAACCATGGACTACATCATAGACACAATATCTGCTGCTCATTCCCTGATGCCACTGCTTGGTCTACTGAAGTTGAATGGGAAACTGGTCACTGTAGGGTTGCCTAGCAAGCCCCTTGAGCTCTCTGTCTTTCCATTAGTTGCAGGACGGAAGCTTATAGGAGGGAGTAACTTTGGAGGGCTGAAGGAGACTCAGGAGATGCTCGATTTCTGCGGCAAGCACAACATAACTGCAGATATTGAGTTGATTAGGATGGACGAAATCAACACGGCCATGGAAAGGCTTCACAAAGCTGATGTGAAATATCGGTTTGTGATTGATGTGGCCAACTCCTTGTCAAGTTTGTAG 1080 0.4509 MAKSPETELPLKAFGWAARDTSGTLSPFHFSRRENGDDDVSVKILYCGVCHSDLHTLKNDWGFTTYPVVPGHEIVGVVTKVGINVKKFRVGDNVGVGVIVESCQTCENCNQDLEQYCPKLVFTYNSPYKGTRTHGGYSDFVVVHQRYVVQFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAIKFGKAFGLKVTVISTSPNKETEAIDKLGADSFLVSKDPEKMKAAMGTMDYIIDTISAAHSLMPLLGLLKLNGKLVTVGLPSKPLELSVFPLVAGRKLIGGSNFGGLKETQEMLDFCGKHNITADIELIRMDEINTAMERLHKADVKYRFVIDVANSLSSL* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3239 359 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE 2-RELATED 12 357 - -
Mtr8g3239 359 PANTHER ALDEHYDE REDUCTASE 12 357 - -
Mtr8g3239 359 Gene3D - 16 352 - -
Mtr8g3239 359 SUPERFAMILY GroES-like 20 184 IPR011032 -
Mtr8g3239 359 CDD CAD1 14 351 - -
Mtr8g3239 359 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 155 320 IPR036291 -
Mtr8g3239 359 SMART PKS_ER_names_mod 23 350 IPR020843 GO:0016491
Mtr8g3239 359 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270|GO:0016491
Mtr8g3239 359 Pfam Zinc-binding dehydrogenase 193 314 IPR013149 -
Mtr8g3239 359 Pfam Alcohol dehydrogenase GroES-like domain 38 150 IPR013154 -
Mtr8g3239 359 Gene3D - 166 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3239 Mtr-Chr8 42909290 42913106 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3239 12 356 Monolignol Biosynthesis Gene Families AT2G21730 71.552 0.0 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3239 K00083 - mtr:MTR_8g092630 672.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3239 8 42909290 42913106 Mtr8g3239 8 42909290 42913106 ECH