Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3234 ATGGACTTCGACGAGTACGAGTACTTGGAGAAGACGGTGGAGGAGCAACCGGAAGACAAGGATTCATCCAAAAAGAAGAACACTGATATCACCGACATTAAATCCGAGAGGACTTACCGGAAGCACGGCATCGACGACGATCTCGACGGCGGCGAAGATAGGCGGAGCAAGAGGTCACGCGGCGGAGATGACGAGAATGGCTCTAAGAAGGATCGCGATAGAGACAGAGACCGTGAACGTGACCGAGAACACCGCGAACGATCTTCCGGTCGTCACCGGGAGAGGGACGGAGAGAGAGGTAGTAGAGAGAAAGAGAGGGAGAAGGACGTAGAGAGAGGTGGGAGAGATAAGGAGAGGGATAGGGAGAGAGAAAAGGAGAGGGAGAGGAGAGATAAGGAAAGGGAAAAGGAACGGGAGAGAAGAGATAAGGAGAGAGAGAAGGAGCGTGCTGAGAGAGAAAAAGAGGAGAAAGAGAGACCAAGGAGGAGTATGAGTCGTCCTGAGAGAGACAGAGGAGAGCGAGATTTCGAAAACAGAGATGGCAGGAGATTCAGGGATAAGAAAGAGAATGTGGAACCTGAGGCAGACCCAGAAAGGGATCAGAGAACTGTTTTTGCCTACCAGATGCCCTTAAAAGCAACGGAGAGAGATGTATACGAGTTCTTCTCAAAAGCTGGCAAGGTGAGAGATGTTCGTCTGATCATGGATAGGAACTCAAGACGATCTAAAGGAGTTGGGTATATTGAATTTTATGATGCGATGTCAGTGCCAATGGCAATTGCTCTCTCTGGCCAACTACTTCTTGGGCAACCTGTAATGGTGAAACCTTCTGAGGCCGAAAAAAATCTTGTTCAATCTAATGCTTCCAGTGGAGCTGCTGTAGTAGGACCATATGGAGCAGTGGACAGAAAATTGTATGTGGGGAATCTTCACTTCAACATGACTGAGGCTAATCTGCGAGAGATTTTTGAGCCATTTGGTCAGATTGAGGTTGTACAACTTCCTCTTGACATGGAGACGGGACACTGCAAGGGTTTTGGGTTTGTTCAATTTGCCCATCTTGAACATGCAAAGGCAGCTCAGAGTTTAAATGGGAAATTGGAAATTGCTGGCAGGACTATAAAGGTTTCATCTGTTACAGATCATGTTGGAAGTCAGGATACAACTACAAAGTCTGCAGACTTTGATGATGATGAAGGAGGATTGACCTTAAATGCCCACTCAAGGGCACTGCTTATGCAAAGATTGGCTGGTACTGACATTACCACAAGCATTGGTGTGCCAACTGTGAATGGGTCGGTTCCTGTTCAGCAGGCTTTTAGCATGCCTTTTGGCAATCCAGGTGTTATACCCGCGTCAGTTCTACCAACACAAGTCATGCCTACCCCTGTCGCAGAACCAGTAGGAATTCCCAGCGAGTGTTTATTATTGAAGAATATGTTTGATCCAAGCACTGAGATAGAACCAGATTTTGATATAGACATAAAAGAGGATGTAGAGGAAGAGTGTTCTAAATACGGCCGGGTGATGCACATTTATGTTGACAAAAGAAGTGCAGGTTTCGTTTACTTGCAGTTTGAAACAGTGGAAGCATCAAGTGCTGCACAACGAGCAATGCACATGAGATGGTTTGCACGCAGGTTGATCACAGCTATCTTCATGCAACCACATTTATATGAAGCCAAATTTAAGGACGAATCTTGA 1704 0.4642 MDFDEYEYLEKTVEEQPEDKDSSKKKNTDITDIKSERTYRKHGIDDDLDGGEDRRSKRSRGGDDENGSKKDRDRDRDRERDREHRERSSGRHRERDGERGSREKEREKDVERGGRDKERDREREKERERRDKEREKERERRDKEREKERAEREKEEKERPRRSMSRPERDRGERDFENRDGRRFRDKKENVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASSGAAVVGPYGAVDRKLYVGNLHFNMTEANLREIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGSQDTTTKSADFDDDEGGLTLNAHSRALLMQRLAGTDITTSIGVPTVNGSVPVQQAFSMPFGNPGVIPASVLPTQVMPTPVAEPVGIPSECLLLKNMFDPSTEIEPDFDIDIKEDVEEECSKYGRVMHIYVDKRSAGFVYLQFETVEASSAAQRAMHMRWFARRLITAIFMQPHLYEAKFKDES* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3234 567 PANTHER CC1-LIKE SPLICING FACTOR 1 567 - -
Mtr8g3234 567 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 271 IPR000504 GO:0003723
Mtr8g3234 567 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 496 549 IPR000504 GO:0003723
Mtr8g3234 567 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 305 375 IPR000504 GO:0003723
Mtr8g3234 567 SUPERFAMILY RNA-binding domain, RBD 194 283 IPR035979 GO:0003676
Mtr8g3234 567 Coils Coil 115 160 - -
Mtr8g3234 567 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 567 - -
Mtr8g3234 567 Gene3D - 468 567 IPR012677 -
Mtr8g3234 567 TIGRFAM SF-CC1: splicing factor, CC1-like family 84 565 IPR006509 GO:0003723|GO:0005634|GO:0006397
Mtr8g3234 567 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 202 279 IPR000504 GO:0003723
Mtr8g3234 567 SMART rrm1_1 474 551 IPR000504 GO:0003723
Mtr8g3234 567 SMART rrm1_1 203 275 IPR000504 GO:0003723
Mtr8g3234 567 SMART rrm1_1 304 377 IPR000504 GO:0003723
Mtr8g3234 567 MobiDBLite consensus disorder prediction 1 201 - -
Mtr8g3234 567 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 396 491 IPR029123 -
Mtr8g3234 567 CDD RRM3_RBM39_like 472 554 - -
Mtr8g3234 567 Gene3D - 195 289 IPR012677 -
Mtr8g3234 567 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 303 381 IPR000504 GO:0003723
Mtr8g3234 567 CDD RRM2_RBM23_RBM39 305 377 - -
Mtr8g3234 567 CDD RRM1_RBM39_like 203 275 - -
Mtr8g3234 567 Gene3D - 299 395 IPR012677 -
Mtr8g3234 567 MobiDBLite consensus disorder prediction 13 201 - -
Mtr8g3234 567 SUPERFAMILY RNA-binding domain, RBD 303 556 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3234 Mtr-Chr8 42850503 42856635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3234 276 376 Eukaryotic Initiation Factors Gene Family AT4G34110 31.373 8.08e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3234 K13091 - gmx:100818613 736.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3234 8 42850503 42856635 Mtr3g3302 3 46975227 46983133 ECH
Mtr8g3234 8 42850503 42856635 Mtr8g3234 8 42850503 42856635 ECH
Mtr8g3234 8 42850503 42856635 Mtr3g3302 3 46975227 46983133 PCT