Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3231 ATGCCATTGCCAATGATGTTTCCTGGTCTTAATAGAGAGGGAGAGATGTCAGCTATGGTCTCTGCTTTAACACATGTGATATGTGGTGATCAGAACAATGATGGTGGTAGTGATGGTTATAATGTTCTGAATCAGAATATGAATCACAATGCATTTGAAGGAGATGGTATTGATATTAAGCCTTTTGGTTCTTCTTCAACTTCTTTATCTTATGGTGGCAATTCTGCACTCAAGAGAAGGAGGGAAGATGGTGGATTCTTTGACAATTCATCTTCTCCTATCCCCCAAATTAAGCACCAAGGTGTAGAATGTTCAAGCAACTGGACAAACACAGTAACAACAACAACAGGAAGGAGCCAAGTTGAAGAACAAATATATGAATACAGAACAGACAATAACAATGTGAAAAATGAAGACCAACCAAAAAGAAAATACAGAGGAGTAAGACAGAGGCCATGGGGAAAATGGGCAGCAGAGATAAGAGATCCTTTCAAAGCTACAAGAGTATGGTTAGGTACATTTGAAACAGCTGAAGATGCAGCTAAAGCCTATGATCAAGCTTCATTGCGTTTTAGAGGAAACAAAGCAAAACTCAACTTCCCTGAAAATGTTAAGCTCAAGCAACAACAATCAACACCGACCCATTTGAACATTTCACATTCTAATAGTGCCCTTTTGTCACATCAACCTAGAACTGATCCTGATCCTATAGTTCACAATGAAACTCTTCATACTTTGCAAAGTTCAAACAAGTATTATGACTACTTCAATGGTCAAAACTTTCCAATGGCTTCTCTTCAAACTTCAGTGTCACCGTCAGCTTCTTATTCTTCAAGTTATACAACTACTACTTTTGCTTCTTCTTTTAGTTCCCCACAGACAACTTCTTCAATTCCTTCGGGTTTGACAGCATGGCCTTCTGGATCCTCTCCCTCAGGGTGA 942 0.3907 MPLPMMFPGLNREGEMSAMVSALTHVICGDQNNDGGSDGYNVLNQNMNHNAFEGDGIDIKPFGSSSTSLSYGGNSALKRRREDGGFFDNSSSPIPQIKHQGVECSSNWTNTVTTTTGRSQVEEQIYEYRTDNNNVKNEDQPKRKYRGVRQRPWGKWAAEIRDPFKATRVWLGTFETAEDAAKAYDQASLRFRGNKAKLNFPENVKLKQQQSTPTHLNISHSNSALLSHQPRTDPDPIVHNETLHTLQSSNKYYDYFNGQNFPMASLQTSVSPSASYSSSYTTTTFASSFSSPQTTSSIPSGLTAWPSGSSPSG* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3231 313 MobiDBLite consensus disorder prediction 275 313 - -
Mtr8g3231 313 CDD AP2 144 203 IPR001471 GO:0003700|GO:0006355
Mtr8g3231 313 SUPERFAMILY DNA-binding domain 144 202 IPR016177 GO:0003677
Mtr8g3231 313 Gene3D AP2/ERF domain 143 203 IPR036955 GO:0003700|GO:0006355
Mtr8g3231 313 Coils Coil 118 138 - -
Mtr8g3231 313 ProSiteProfiles AP2/ERF domain profile. 144 201 IPR001471 GO:0003700|GO:0006355
Mtr8g3231 313 PANTHER DNA-BINDING DOMAIN PROTEIN 7 311 - -
Mtr8g3231 313 PANTHER DNA-BINDING DOMAIN 7 311 IPR044808 GO:0003700|GO:0009873
Mtr8g3231 313 Pfam AP2 domain 144 193 IPR001471 GO:0003700|GO:0006355
Mtr8g3231 313 PRINTS Ethylene responsive element binding protein signature 145 156 IPR001471 GO:0003700|GO:0006355
Mtr8g3231 313 PRINTS Ethylene responsive element binding protein signature 167 183 IPR001471 GO:0003700|GO:0006355
Mtr8g3231 313 SMART rav1_2 144 207 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3231 Mtr-Chr8 42814332 42816206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3231 6 253 AP2-EREBP Transcription Factor Family AT5G64750 39.259 4.29e-34 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr8g3231 AP2 4.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3231 - - mtr:MTR_8g092460 580.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3231 8 42814332 42816206 Mtr8g3231 8 42814332 42816206 ECH
Mtr8g3231 8 42814332 42816206 Mtr3g3300 3 46951393 46953609 ECH