LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr8g3224	ATGGGATGTGTTGTTAGTAGCAAGTATACTCCCCCTCGAAACCGAAACCGGAGCCGCCATGTTGAGAGGTTGAAAGATGAGTATTCAAACGGCGGCTCTTCACTCAAACCAATCATCAGACATAACAAGAATTATTCATCCAAGCACTCAGAAGTTGAGACTAAGAAGAGAGTTGTGATTGTGAAGACTACTACTACATCAGTTGACAGTGCTGGAGGAGGAGAAGGAGAAAGGAATGATGATAAGATACAGGGTGCAGCAGTTGGAGATATTTTTGATGATAAGTCTGAGGAGGAGAAAAGGAAGATGAAAATTGCAAGCTATGAAGTTAAAGTGGGAGAGGGTGAATGGCCAAAATGGCTAGTTGATAATATCTCTGAAGACGTTTTGGCTACTTTGATTCGTAAGACTGCTGATTCATATGAAAAACTAGGAAAGGTAGGACGTGGAACATATAGCAATGTATACAAAGCTAGAGATAAGGACAGTGGAAAGATAGTTGCTTTGAAGAAGGTAAGATTTGACACTTCAGATTCTGAAAGCATCAAGTTTATGGCAAGAGAGATTATGATAATACAAACGTTGGATCATCCAAATATCATCAAACTTGAAGGACTGGCAACATCAAGGATGCAATATAGTCTTTATCTTGTCTTTGAATACATGCAATGTGACCTTACTAGAGTTATCTCACGCCCTGGAGAAAGACTCAATGAACCACAGATAAAATGTTACATGCAACAGCTGCTTTTGGGACTCCAGCATTGTCACGAGAGGGGAGTTATGCACCGAGATATTAAAGCTTCTAATCTGTTAATAAATAAACAAGGAGTGCTAAAAATTGCTGATTTTGGTCTTGCAAATTCTTTAAAAATTAAACCTAAAGGGCCTCTTACAAATAGAGTTGTAACACTTTGGTATAGAGCTCCTGAACTTCTTTTAGGTTCAATTGATTACGATTATAGCATTGATATATGGAGTGTAGGTTGCTTGTTGGCTGAGATGTTTGTTGGAAGACCAATTATGCCCGGGAGGACTGAGATTGAACAACTCCATATGATAGTTAAACTTTGTGGTTCACCTTCAGAGGATTACTTGTCAAAAATGAAGCTAAAGACAAGCTTCCGTACACCACAACGTTATAAAGCTAGTTTTGAAGAAAACTTTAAGGATTTCCCTTCATCTGCACTTAGTCTCTTGACTACACTTCTTAATCTTGACTCTCAACAGCGTGGCACTGCTGCCTCTGCTCTTGAAACTGATTTCTTCAAATCTAGTCCCTTAGCATGTGACCTTTCGGAATTACCGGTGATAATTAACAGAGGCGATGATGAACGCTCACATATTAAAAGACGCAAAAGGCGCAAAGGGAAAAAGGGGCAACTATCTAAAAGAAGTGCAAGCAATTTAAGCCTGTCAGGAATGATCCAGGCGGCTGAACAAGGCAAGACAGATTCAGAACAATCAAAGGAGGAAAAGAGTATAGGACATAACATGCTAGAACAGGAAACAGGGAATAGTGGAAGCAGCAAAGCATCATCAGTATTTACTAACGAAAGGAGCATGAATGCATCTATATCCCCAGTTTTTCCCTCTAGCAGGAAAATATCCCCCAAAACTGAAGGTCATCCTAATGCTCTTAAGAATATAAAGAACTACCCACTCTTACATGCATCTATACTTGATATGATAAACCCCAAAGAAGGCAACGATTTTGGTCAGTTTCGTAGGTCCTTCTCGACATTGGATTTTCGGCTTGATCCAAATAAGCTATCGAGTCTCTATGGATCAAATAGTACGTTGGACCGTGAAGTTTGA	1818	0.396	MGCVVSSKYTPPRNRNRSRHVERLKDEYSNGGSSLKPIIRHNKNYSSKHSEVETKKRVVIVKTTTTSVDSAGGGEGERNDDKIQGAAVGDIFDDKSEEEKRKMKIASYEVKVGEGEWPKWLVDNISEDVLATLIRKTADSYEKLGKVGRGTYSNVYKARDKDSGKIVALKKVRFDTSDSESIKFMAREIMIIQTLDHPNIIKLEGLATSRMQYSLYLVFEYMQCDLTRVISRPGERLNEPQIKCYMQQLLLGLQHCHERGVMHRDIKASNLLINKQGVLKIADFGLANSLKIKPKGPLTNRVVTLWYRAPELLLGSIDYDYSIDIWSVGCLLAEMFVGRPIMPGRTEIEQLHMIVKLCGSPSEDYLSKMKLKTSFRTPQRYKASFEENFKDFPSSALSLLTTLLNLDSQQRGTAASALETDFFKSSPLACDLSELPVIINRGDDERSHIKRRKRRKGKKGQLSKRSASNLSLSGMIQAAEQGKTDSEQSKEEKSIGHNMLEQETGNSGSSKASSVFTNERSMNASISPVFPSSRKISPKTEGHPNALKNIKNYPLLHASILDMINPKEGNDFGQFRRSFSTLDFRLDPNKLSSLYGSNSTLDREV*	606

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr8g3224	605	MobiDBLite	consensus disorder prediction	463	483	-	-
	Mtr8g3224	605	Gene3D	Phosphorylase Kinase; domain 1	130	223	-	-
	Mtr8g3224	605	MobiDBLite	consensus disorder prediction	448	462	-	-
	Mtr8g3224	605	SUPERFAMILY	Protein kinase-like (PK-like)	135	428	IPR011009	-
	Mtr8g3224	605	SMART	serkin_6	141	423	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mtr8g3224	605	MobiDBLite	consensus disorder prediction	526	545	-	-
	Mtr8g3224	605	MobiDBLite	consensus disorder prediction	484	498	-	-
	Mtr8g3224	605	ProSitePatterns	Protein kinases ATP-binding region signature.	147	170	IPR017441	GO:0005524
	Mtr8g3224	605	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	261	273	IPR008271	GO:0004672\|GO:0006468
	Mtr8g3224	605	MobiDBLite	consensus disorder prediction	1	38	-	-
	Mtr8g3224	605	ProSiteProfiles	Protein kinase domain profile.	141	423	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mtr8g3224	605	MobiDBLite	consensus disorder prediction	15	29	-	-
	Mtr8g3224	605	MobiDBLite	consensus disorder prediction	446	513	-	-
	Mtr8g3224	605	MobiDBLite	consensus disorder prediction	499	513	-	-
	Mtr8g3224	605	Pfam	Protein kinase domain	141	423	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mtr8g3224	605	PANTHER	CELL DIVISION PROTEIN KINASE	87	560	-	-
	Mtr8g3224	605	PANTHER	CYCLIN-DEPENDENT KINASE	87	560	-	-
	Mtr8g3224	605	Gene3D	Transferase(Phosphotransferase) domain 1	224	464	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr8g3224	Mtr-Chr8	42720383	42725153	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr8g3224	136	461	Core Cell Cycle Gene Families	AT5G10270	45.058	4.22e-92	291

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Mtr8g3224		Pkinase	1.4e-70	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr8g3224	K08819		-	gmx:102667260	692.96