Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3201 ATGGCGCCGACGAAGGAGAGAGCACCTAGGGTTAGCCGCAACCCTGATTTGATCAGAGGAATTGGAAAGTTCTCAAAGTCGCAGATGTATCACAAGAAAGGTATCTGGGCTATTAAGGCAAAAAACGGTGGCGTTTTCCCTCGTCATGATCCTAAACCTAAGCCCGAAACTGCTGCTGAAAAACCACCAAAATTTTATCCTGCTGATGATGTGAAAAAACCTCTTCGTAACAAGCACAAGCCTAAGCAGACTAAGCTCAGGGCAAGCATCACTCCCGGCACAGTGCTGATTCTTCTTGCTGGTAGATTTAAGGGCAAGAGGGTGGTGTTTTTGAAGCAGCTTCCTTCTGGATTGCTTCTTGTAACTGGTCCCTTCAAGATCAACGGAGTTCCTTTGAGACGTGTGAATCAGGCCTATGTGATTGGTACATCAACCAAAGTCGATATCTCCGGTGTTAATGTGGATAACCTTGATGACAAGTACTTTTCAAAGGAAGCCAAAAAGAAGAGCAAGGGAGAAGGCGAATTCTTTGAGTCAGACAAGGAGGAGAAAAAGGCGTTACCTCAGCAGAAGAAAGATGACCAGAAAACAGTGGACGCTGCATTGATAAAAGCTATTGAGAGCGTTCCAGACTTGAAGACTTATCTTGGTGCCAGGTTTTCTCTCAAGGCAGGTGTGAAGCCACACGAACTCGTCTTCTAG 702 0.4573 MAPTKERAPRVSRNPDLIRGIGKFSKSQMYHKKGIWAIKAKNGGVFPRHDPKPKPETAAEKPPKFYPADDVKKPLRNKHKPKQTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVNVDNLDDKYFSKEAKKKSKGEGEFFESDKEEKKALPQQKKDDQKTVDAALIKAIESVPDLKTYLGARFSLKAGVKPHELVF* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3201 233 Pfam Ribosomal protein L6e 127 233 IPR000915 GO:0003735|GO:0005840|GO:0006412
Mtr8g3201 233 Gene3D - 88 171 IPR014722 -
Mtr8g3201 233 SUPERFAMILY Translation proteins SH3-like domain 88 178 IPR008991 -
Mtr8g3201 233 CDD KOW_RPL6 82 233 IPR041997 -
Mtr8g3201 233 MobiDBLite consensus disorder prediction 45 76 - -
Mtr8g3201 233 MobiDBLite consensus disorder prediction 173 195 - -
Mtr8g3201 233 Pfam Ribosomal protein L6, N-terminal domain 4 62 IPR005568 GO:0003735|GO:0005840|GO:0006412
Mtr8g3201 233 MobiDBLite consensus disorder prediction 41 85 - -
Mtr8g3201 233 PANTHER 60S RIBOSOMAL PROTEIN L6 1 233 - -
Mtr8g3201 233 PANTHER 60S RIBOSOMAL PROTEIN L6 1 233 IPR000915 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3201 Mtr-Chr8 42512090 42514070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3201 3 233 Cytoplasmic Ribosomal Protein Gene Family AT1G74050 79.741 6.88e-121 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3201 K02934 - gmx:100785356 378.637