Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3186 ATGTCAGGTAATAAGAGAAACCAAACAAGTCCTGTAGGAAGTCCAACATCAGGAAACATCTCAGACAGTTTATCATCAAAAGAACAAGACAGGTTCCTACCAATTGCTAACGTGAGCCGTATAATGAAAAGAGCACTTCCAGCAAATGCTAAAATCTCAAAAGAAGCAAAAGAAACGGTTCAAGAATGTGTCTCTGAGTTCATTAGTTTCATTACTGGTGAAGCTTCTGATAAGTGTCAGAGAGAAAAAAGGAAAACAATTAATGGTGATGATCTTCTTTGGGCTATGACAACACTTGGTTTTGAAAACTATGTTGGTCCATTGAAAGTTTATCTTAATAATTATAGGGAAATTGAAGGGGAAAAGAGTAATTCTAGTGCTACTAAACAAGATGATCAATATGATCATAATTCTTGTTCAATTGATGTTAATGATCTTGGTGGTGGATTTTATGCTCCAAAGAGGTTCCAAGAGATTAATGGAGGGATTCTGGATTATAGAGTAATTGGTCAAAGTGTGGTGAATAATGGTAATAGTGATGAAACAGAACATGCAATTGGAAGTGGTAATAAAATCATGCCACCAAACCTACGTTACAGGGTTGAATGGTAG 612 0.3578 MSGNKRNQTSPVGSPTSGNISDSLSSKEQDRFLPIANVSRIMKRALPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKVYLNNYREIEGEKSNSSATKQDDQYDHNSCSIDVNDLGGGFYAPKRFQEINGGILDYRVIGQSVVNNGNSDETEHAIGSGNKIMPPNLRYRVEW* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3186 203 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 12 139 IPR027113 GO:0001228|GO:0006355|GO:0016602
Mtr8g3186 203 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 32 96 IPR003958 -
Mtr8g3186 203 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-11 12 139 - -
Mtr8g3186 203 SUPERFAMILY Histone-fold 29 143 IPR009072 GO:0046982
Mtr8g3186 203 MobiDBLite consensus disorder prediction 1 28 - -
Mtr8g3186 203 ProSitePatterns NF-YB/HAP3 subunit signature. 63 79 IPR003956 GO:0005634|GO:0006355|GO:0043565
Mtr8g3186 203 Gene3D Histone, subunit A 20 140 IPR009072 GO:0046982
Mtr8g3186 203 PRINTS CCAAT-binding transcription factor subunit A signature 60 78 - -
Mtr8g3186 203 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Mtr8g3186 203 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3186 Mtr-Chr8 42383439 42384655 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3186 25 133 CCAAT-HAP3 Transcription Factor Family AT4G14540 82.569 1.58e-64 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Mtr8g3186 CBFD_NFYB_HMF 1e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3186 K08065 - gmx:100797721 269.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3186 8 42383439 42384655 Mtr8g3186 8 42383439 42384655 ECH