Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3179 ATGATTGGAGCTGGCAATTGGAAGAGATTGAATTGGATAATGGTTTGCGTTGAGAATTTGGTTCTGTATTTTTTGACGAACATGGATCCTTCATCATCTTCTCAATTTGTTTCCTCAAGAAATATTGGTGTATATGATCCTATACACCAATTTACTATATGGGAAGAACATTTCAAGAGTAATGGTGATTCAAGTGTATATGAACCTGAAATGAAGTTAAATAATCAGTCAGAGGATGCTTCTTTTGGAATATTGGGAACATCTATCAAGTATGACCACCAAGAAGCTAACAAAGTTACTAATAAGGTAAGATTTGTATTGCTACTTGCTTGGTATCATGGTGAGTTTGTCAAAATCACAGTGAGCTATCGTGATTTTGCAAAAGCTACACTGTGTCGCTTCAACATAATCAAGATGCAAAGACGTCTCGCACAAAATCGAGAGGCTGCTCGTAAGAGTCGTTTGAAGAAGAAGGCTCATATACAACAGTTAGAATCGTGTCGTTTAAAGCTGTTACAGGTAGAGCAAGAGCTAGATCATACAAAACAGGGATTGTATATTGGTGGTGGATTGGATTCTAATAATTTAGGTTTTGCTGGCTCTGTAAATTCAGAAATAGCAACTTTTAAGATGGAGTATGAACACTGGGTGGAAGAGCTAAACAGACAAATGTTGGAATTGAAAGGTGCTTTAAGTGCTCATAGCAGTGATATACGAATTGGGGAACTTGTAAATGGCCTCATGAATCACTATTTCAAACTATTTTGCATGAAATCTGATGCTGCAAAAGTAGATGTTTTCTATGTTATCACTGGCATGTGGAAAACAACAGCTGAAGGGTTTTTCTTGTGGATTGGAGGTTTTCGCCCCTCCGAACTTCTAAAGGTTCTGGTCCCTTTAATTGAACCATTGACAGAGGAACAACGGTTTGATGCCTATAATCTTGAGAAGTCATGCCGACAAGCAGAAGATGCCCTTTCACAAGGTATGGAAAAACTACAGGGAATGCTTGTTGACACAGTTGCAGCAGGACAACTCGTTGAAGGAACTTACATTCCACAGATGGATATCGCAATAGAGAGGCTGGAAGCTCTGGCTAGCTTTGTGAACCAGGCTGATCATCTTCGACAGGAAACGTTGCAACAGATGTCTCGAATACTTACCGTACGTCAAACTGCTCGATGGCTGCTTGCTTTGGGTGAATACTTTCAACGCCTAAGGGATTTGAGCAAACTTTGGACCAATCGTCCTCGTGAACCTGCATAG 1266 0.3989 MIGAGNWKRLNWIMVCVENLVLYFLTNMDPSSSSQFVSSRNIGVYDPIHQFTIWEEHFKSNGDSSVYEPEMKLNNQSEDASFGILGTSIKYDHQEANKVTNKVRFVLLLAWYHGEFVKITVSYRDFAKATLCRFNIIKMQRRLAQNREAARKSRLKKKAHIQQLESCRLKLLQVEQELDHTKQGLYIGGGLDSNNLGFAGSVNSEIATFKMEYEHWVEELNRQMLELKGALSAHSSDIRIGELVNGLMNHYFKLFCMKSDAAKVDVFYVITGMWKTTAEGFFLWIGGFRPSELLKVLVPLIEPLTEEQRFDAYNLEKSCRQAEDALSQGMEKLQGMLVDTVAAGQLVEGTYIPQMDIAIERLEALASFVNQADHLRQETLQQMSRILTVRQTARWLLALGEYFQRLRDLSKLWTNRPREPA* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3179 421 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 141 156 IPR004827 GO:0003700|GO:0006355
Mtr8g3179 421 PANTHER BZIP FAMILY TRANSCRIPTION FACTOR 28 420 - -
Mtr8g3179 421 SMART brlzneu 134 215 IPR004827 GO:0003700|GO:0006355
Mtr8g3179 421 Gene3D - 137 186 - -
Mtr8g3179 421 PANTHER TRANSCRIPTION FACTOR TGA9 28 420 - -
Mtr8g3179 421 Pfam bZIP transcription factor 137 175 IPR004827 GO:0003700|GO:0006355
Mtr8g3179 421 Coils Coil 217 237 - -
Mtr8g3179 421 SUPERFAMILY Leucine zipper domain 137 166 IPR046347 GO:0003700|GO:0006355
Mtr8g3179 421 Pfam Seed dormancy control 223 298 IPR025422 GO:0006351|GO:0043565
Mtr8g3179 421 ProSiteProfiles DOG1 domain profile. 206 416 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3179 Mtr-Chr8 42339077 42343004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3179 31 421 Calmodulin-binding Proteins AT5G65210 55.611 5.83e-150 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Mtr8g3179 DOG1 5.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3179 K14431 - gmx:100780003 508.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3179 8 42339077 42343004 Mtr8g3179 8 42339077 42343004 ECH
Mtr8g3179 8 42339077 42343004 Mtr3g2943 3 43306544 43310090 ECH
Mtr8g3179 8 42339077 42343004 Mtr3g2943 3 43306544 43310090 PCT