Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3175 ATGACAATTCTCTCTGAGCTCTTATATCAGCTTTATGTGAAAACAATAGTCCTATTTACATATATGCTAATCGAACTTATCCTTGTCATTTGTTACCTAAAGTCAACAAAAAATCCAATTACCACAACCCAATACCTCAATTTCATTGAAGAGAAGAACCCCACAACAAGGTTGAAGAAGCTTGCAGCAGAGCACATAGATTGTAGGGTATGTTTATCTGAGTTTGAGGAAGGGGACATTGTTAGAAGCTTGAACTGTGAACACACATTTCATAAGGATTGTTTGGACAAGTGGTTCTTGCAAGAACAATATTGTGCTACTTGTCCACTTTGCAGGAACAAAGTTTTGTCGGACGATGTTGTTTCCAAGTATTGTTTGCTTCAAAATCAGTGA 393 0.369 MTILSELLYQLYVKTIVLFTYMLIELILVICYLKSTKNPITTTQYLNFIEEKNPTTRLKKLAAEHIDCRVCLSEFEEGDIVRSLNCEHTFHKDCLDKWFLQEQYCATCPLCRNKVLSDDVVSKYCLLQNQ* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3175 130 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 117 IPR013083 -
Mtr8g3175 130 PANTHER - 1 130 - -
Mtr8g3175 130 ProSiteProfiles Zinc finger RING-type profile. 68 112 IPR001841 -
Mtr8g3175 130 Coils Coil 127 130 - -
Mtr8g3175 130 Pfam Ring finger domain 67 112 IPR001841 -
Mtr8g3175 130 SUPERFAMILY RING/U-box 48 118 - -
Mtr8g3175 130 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 1 130 - -
Mtr8g3175 130 SMART ring_2 68 111 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3175 Mtr-Chr8 42309551 42311768 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3175 67 123 C3H Transcription Factor Family AT1G15100 56.140 1.21e-16 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3175 K16282 - gmx:102661133 196.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3175 8 42309551 42311768 Mtr8g3175 8 42309551 42311768 ECH
Mtr8g3175 8 42309551 42311768 Mtr3g2941 3 43288547 43289350 PCT