Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3171 ATGGGATTGAGAGATCGTAGTAGCAGCATGGAGGATCCAGATGGGACATTAGCTAGTGTTGCTCAATGCATTGAGCAGCTGCGCCAGAGCTCGTCTTCTGTGCACGAGAAAGAGTATTCCTTAAGGCAGTTATTGGATCTTATAGATTCGCGTGAAAATGCATTTAGTGCTGTTGGATCTCACTCTCAGGCAGTTCCAGTACTTGTTTCCCTTCTTCGGTCAGGTTCGTTGAATGTGAAGATCCAGGCAGCAACTGTTTTGGGTTCACTTTGTAAAGAAAATGAACTGAGGGTGAAAGTCTTGCTTGGTGGATGTATTCCTCCATTGCTTGGTCTGCTGAAGTCAAATTCTACTGAAGGCCAAATTGCTGCTGCAAAGACTATATATGCTGTCTCTCAAGGTGGCGCGAGAGACCATGTTGGCTCAAAAATATTTTCGACCGAAGGAGTAGTACCAGTGCTTTGGCAGCAGTTGCGAACTGGCCTGAAAACCGGAAACGTAGTTGAAAGTTTATTGACGGGAACATTGAAAAATCTCTCCAGCAATGCAGAGGGATTCTGGAATGCAACAATTCAAGCCGGAGGAGTGGACATATTAGTGAAGTTATTGGCAACAGGGCAGCCTAGCACTTTAGCCAATGTTTGCTTTTTGCTTGCTTCTGTAATGATGGAGGATGCATCTGTTTGTTCGAAAGTGTTGAACGCAGAGGTGACTAAACAACTCTTGAAACTATTAGGCCCCGGTAATGATGACCTCGTTAGAGCTGAAGCAGCTGGTGCTCTTAAATCTCTATCTGCTCAGTGCAAAGAGGCGAGACGGGAGATAGCCAGTTCTAATGGCATTCCTGCTTTGATCAATGCTACCATAGCTCCTTCTAAAGAATACATGCAGGGTGAGTGTGCTCAAGCATTGCAAGAGAATGCTATGTGTGCTTTAGCAAACATCTCTGGTGGTTTGTCTTATGTCATATCTAGCCTTGGTCAAAGCCTTGAATCATGCTCTTCCCCTACCCAAACTGCTGACACTTTAGGGGCTATAGCATCAGCTCTTATGATATATGATAACAAGGCAGAATCTACCAAACCATCAGATCCTTTGGTGGTTGAACAGACATTACTCAAACAATTCAAACCTCGCTTACCCTTCCTTGTGCAAGAACGGACCATTGAAGCTTTAGCTAGTTTGTACGGCAATCCCATACTCTCAACTAAACTGGCAAATTCCGATGGAAAACATTTGCTTGTTGGTCTGATAACGATGGCTGCTGACGAAGTGCAAGATGAGCTTATAAAAGCTCTTTTGTCACTATGCAAAAATGAAGGAAGCCTATGGCGTGCACTTCAGGGTCGTGAAGGAGTTCAGCTGTTGATATCTCTTCTTGGTCTTTCATCAGAACAGCAGCAAGAATGTGCAGTTGCATTGCTTTGCCTTTTATCTAATGAAAACGATGAAAGTAAATGGGCAATTACTGCTGCTGGTGGTATACCCCCACTTGTTCAAATTTTGGAGACAGGATCTGCAAAAGCAAAGGAAGATTCGGCAAGAATCCTTAAGAATTTGTGCAATCATAGTGAAGATATACGTGCTTGTGTTGAAAGTGCAGATGCTGTTCCTGCATTGTTATGGCTATTGAAGAATGGAAGTCCTAACGGGAAGGATATTGCAGCAAAGACCATAAATCATTTAATTCATAAATCTGATACTACCACTATCAGTCAGCTTACAGCCTTATTGACAAGTGACCTTCCTGATTCTAAGGTATATGTTTTGGATGCTTTGAGAAGTATGCTTTGTGTTGCTCCTCTTAGTGACATTTTACGTGAAGGTAGTGCTTCTGGTGATGCATTTGACACCATGATAATGTTATTGAGCGCAACAAAGGAAGAAACTCAGGCAAAATCTGCATCAGCTCTGGCCGAAATTTTTGAAGCTAGGAAAGATTTGCGTGGAAGTAGCATTGCTGTCAAAGCTCTTTGTTCATCCATGAAATTGCTTGATTTTGAATCTGAAAATATCCTAATGGAGTCCTCAAACTGCCTGGCTGCAATATTTCTTTCCATCAATGAGAACAAGGATGTAGCAGCTGTTGCTAAAGATACATTAACCCCCCTAGTTGCACTAGCTAACTCTTCAGTTTTTGAAGTAGCAGAGAGGGCTATAGGTGCTGTAGCAAATCTTATTTTGGATATTGAAATAGCAAAGAAAGTTGTTGCAGAAGAAGTTATCTTGCCTGCTACCAGAGTATTACATGAAGGCACAATTTCTGGAAAAACTCATGCTGCAGCAGCAATCGCTCGCCTCTTACATTCTCAGAAAGTTAATAATGCTGTTATCGATTGTGTGAATCGTGCCGGCACTGTTCTTGCATTAATTTCTTTTTTGGATTCTTCCGCCAGTGGATCTGTTGACACATCAGAGGCTCTAGAAGCACTTGCCATTCTGTCTAGGCCAGAAGAGACCGGTGCAAATATTAAACCAGCATGTGCAGTTTTGGCTGAATTCCCTGAAAGCATAAGACCAATAGTCCTGTGCATTGCCAATTCAACACCGACATTGCAAGATAAAATAATCGAGATTTTATCTCGATTATGTGAAGACCAGCCCGTCGTTTTAGGAGACACTGTTGCTTCTGCCTCTGAATGTATATCTTCAATAGCAAAGAGGATAATTAGTTCCACAAATGTAAAGGTCAAAATTGGTGGAGTTGCGCTTCTTATTTGTGCTGCAAAAGAAAATCCTCAGAGATTGGTGGAGGATCTCAATATATCAAACTTGTCTGCTAACCTTACTCAGTCTCTAGTTGATATTCTTATTTCTGCACAGCCTTCTTTGGGTAATCACGGTGATGATGATAATGACAAGGAATCCATCAGCATATGCAGGCATACAAAAGAAGAGGCCAACAACCATGAATCGAAAACTGGAACTTCTATTATACGTGGTGTTGATTTAGCTATATGGTTACTGTCTATTCTTGCTTGTCATGATGAAAAAAATAAAATAGCAATAATGAAGGCTGGAGCAATTGATGTTCTCGCCGACCGGATCTCCAACTGTTACTCACAATATTCTCAGATTGACTACAAAGAAGATAACAGCATGTGGATTTGTGCCTTATTGTTGGCAATATTATTTCAAGATAGAGATATCATACGGGCACATTCAACCATAAAGTCTGTGCCAGCACTAGCCAATTTATTGAAGTCAGAGGAATCGGCAAACAAATATTTTGCTGCACAATCAATAGCCAGCCTTGTTTGCAATGGTAGCAGGGGAACACTTCTGTCTGTGACAAATTCTGGAGCAGCAAGTGGACTTATCTCTTTGCTTGGTTGTGCTGATACTGATATCCAGGAACTTCTGGAATTATCAGAGGAATTTTCGTTGGTGCGTTATCCTGATCAAGTAGCTCTAGAGAAGTTGTTTAGAGTTGATGATATAAGAGTTGGTGCCACTTCTCGGAAGGCAATACCTGCCCTAGTTGATCTTCTCAAACCAATTCCTGATCGCCCAGGTGCACCATTTTTAGCTCTTGGGCTTTTGACTCAGCTTGGTAGAGATTGCCCGCCAAATAAGACTGTAATGGTAGAATCTGGGGCTTTAGAAGCTCTTACAAAGTATCTTTCCCTTGGTCCACAAGATGCAACCGAAGAAGCAGCTACAGATCTGCTGGGAATTCTGTTTAGTAGTGCTGATATACGAAAACACGACTCTGCATTTGGTGCTGTTAATCAACTTGTAGCTGTCCTACGCTTAGGAGGAAGAGGTGCAAGGTACAGTGCTGCAAAAGCATTGGAAAGTTTATTTTCGGCGGACCACATTAGAAACGCTGACATTGCTCGACAAGCTGTTCAACCCTTGGTAGAAATTCTTAACACTGGTTCAGAAAGGGAGCAGCATGCTGCAATTGCTGCATTGGTTGGGTTACTGAGTGAAAACCCATCAAGAGCACTTGCTGTTGCAGATGTTGAGATGAATGCAGTGGATGTTCTTTATAGGATCCTTTCGTCAAATTGTTCAATGGACCTCAAAGGGGACGCTGCTGAATTATGTTGCGCTCTTTTTGGAAATACAAGGATTCGGTCCACAGCTGCTGCTGCACGATGCGTTGAACCACTAGTCTCTCTCCTTGCAACCGAGTTCAGTCCTGCTCATCATTCAGTAGTCCGGGCATTGGATAGACTTGTTGACGATGAGCAACTGGCTGAATTGGTTGCTGCACATGGGGCAGTCATTCCTCTTGTTAGTCTACTGTCTGGTAGAAACTATGTACTTCACGAGGCCATTTCCAGAGCTCTGGTCAAGTTAGGAAAAGACAGACCTGCTTGTAAAATGGAAATGGTAAAAGCTGGAGTCATTGAAAGTATACTCGACATCTTACAGGAAGCACCTGATTATTTGCTCGCAGCTTTTGCGGAACTGCTGCGTATATTAACCAATAATGCTACCATAGCTAAAGGACCAAGGGCTGCTAAAGTTGTTGAACCCTTGTTTTTGTTATTGGCACGACACGATTTTGTGCCCGACGGACAGCACAGTGCAATGCAGGTTTTGGTTAATATCCTAGAACATCCACAGTGTCGTGCTGACTATTCATTGACTCCTCACAAAGTTATTGAACCACTTATCCCTTTGCTTGATTCACCGATATCGGTTGTGCAACAGTTGGCTGCTGAGCTTCTTTCGCATCTGCTCCTAGAAGAACACCTTCAGAAGGATCCAGTGACACCGAAAGTAATTGCCCCGCTTATAAGAATTCTTGGTTCTGGCATACCTTTACTGCAGCAGAGAGCTTTAAAGGCCCTAGTTAGTATTGCACTAACATGGCCGAACGAAATTGCCAAAGAGGGCGGTGTTGTTGAGATTTCCAGAGTGATATTGCAAGCTGATCCTTCCCTTCCTCATGCTTTATGGGAATCTGCTGCGTCTGTTCTGTCAAGTATTTTGCAATTTAGCTCTGAATTCTACTTAGAAGTGCCTGTTGCTGTGTTGGTAAGGTTGCTTCGATCTGGCTCGGAGAGCACAGTTATCGGTGCATTAAATGCACTTCTGGTTTTGGAAAGTGACGATGGAACTAGTGCAGAAGCTATGGCTGAAAGTGGTGCAATAGAGGCTCTCTTGGAGCTCCTAAGATCTCATCAGTGTGAGGAAACCGCTGCACGACTCTTAGAAGTACTGCTTAACAACGTAAAGATCAGAGAAACGAAAGTCACTAAATCAGCCATCTTACCGTTATCACAGTATCTCTTGGACCCACAAACCCAAGCACAGCACGCAAGGTTATTGGCAACTTTGGCTCTTGGGGATTTGTTCCAGAACGAGGCTCTTGCTCGATCTGGTGATGCAGTTTCTGCCTGTCGTGCTTTAGTGAATGTGCTTGAAGACCAACCAACTGAAGAAATGAAAGTCGTAGCCATATGTGCTTTGCAAAATCTTGTAATGTACAGTCGACCAAATAGAAGAGCGGTTGCAGAGGCCAGTGGTGTTCAGGTTGTATTGGATTTGATAGGTTCAAGTAATCCTGAAACTTCTGTTCAGGCTGCAATGTTTATTAAACTTCTGTTCTCAAATAATACTATTCAAGAGTATGCTTCTAGCGAAACAGTCAGAGCAATCACTGCCACTATTGAAAAAGATTTATGGGCGAGTGGAACCGTGAACGAGGAATATCTGAAAGCATTAAATTCTCTATTCAGCAACTTTCCACGACTGAGAGCAACCGAACCGGCAACACTTAGCATTCCCCATCTGGTAACAGCCTTAAAGACAGGTTCAGAGGCTTGTCAGGAAGCTGCATTGGAAGCACTTTTTCTTCTCAGACAAGCTTGGTCAGCATGCCCTGCTGAAGTCTCAAGAGCTCAGTCAATTGCAGCTGCAGATGCTATTCCTTTTCTGCAGTACTTAATCCAGTCTGGCCCACCTCGATTTCAGGAGAAGGCGGAATTTTTATTGCAGTGTTTGCCAGGTACATTGGTGGTGATCGTCAAGCGTGGTAACAATATGAGACAGTCTGTTGGAATCCCGAGTGTTTACTGCAAGATTACACTTGGCAACTCCCCGCCGAAGCTAACAAAGGTGGTCTCAACTGGTCCTAACCCGGAGTGGGAGGAGAGCTTTACATGGTCCTTTGAGAGTCCTCCAAAAGGCCAGAAGCTTCATATTTCTTGCAAAAACAAGAGCAAAGTGGGAAAGAGTAAATTCGGAAAAGTAACAATCCAAATTGATCGAGTGGTAATGCTAGGAGCTGTAGCTGGTGAGTACACTCTTTTGCCTGCAAGTAAAAGTGGACCCCCAAGGAATCTAGAAATTGAATTTCAATGGTCTAACAAAGTAAGTGATACAACAACTGATACAGTTCAGCAATAG 6366 0.4307 MGLRDRSSSMEDPDGTLASVAQCIEQLRQSSSSVHEKEYSLRQLLDLIDSRENAFSAVGSHSQAVPVLVSLLRSGSLNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSNSTEGQIAAAKTIYAVSQGGARDHVGSKIFSTEGVVPVLWQQLRTGLKTGNVVESLLTGTLKNLSSNAEGFWNATIQAGGVDILVKLLATGQPSTLANVCFLLASVMMEDASVCSKVLNAEVTKQLLKLLGPGNDDLVRAEAAGALKSLSAQCKEARREIASSNGIPALINATIAPSKEYMQGECAQALQENAMCALANISGGLSYVISSLGQSLESCSSPTQTADTLGAIASALMIYDNKAESTKPSDPLVVEQTLLKQFKPRLPFLVQERTIEALASLYGNPILSTKLANSDGKHLLVGLITMAADEVQDELIKALLSLCKNEGSLWRALQGREGVQLLISLLGLSSEQQQECAVALLCLLSNENDESKWAITAAGGIPPLVQILETGSAKAKEDSARILKNLCNHSEDIRACVESADAVPALLWLLKNGSPNGKDIAAKTINHLIHKSDTTTISQLTALLTSDLPDSKVYVLDALRSMLCVAPLSDILREGSASGDAFDTMIMLLSATKEETQAKSASALAEIFEARKDLRGSSIAVKALCSSMKLLDFESENILMESSNCLAAIFLSINENKDVAAVAKDTLTPLVALANSSVFEVAERAIGAVANLILDIEIAKKVVAEEVILPATRVLHEGTISGKTHAAAAIARLLHSQKVNNAVIDCVNRAGTVLALISFLDSSASGSVDTSEALEALAILSRPEETGANIKPACAVLAEFPESIRPIVLCIANSTPTLQDKIIEILSRLCEDQPVVLGDTVASASECISSIAKRIISSTNVKVKIGGVALLICAAKENPQRLVEDLNISNLSANLTQSLVDILISAQPSLGNHGDDDNDKESISICRHTKEEANNHESKTGTSIIRGVDLAIWLLSILACHDEKNKIAIMKAGAIDVLADRISNCYSQYSQIDYKEDNSMWICALLLAILFQDRDIIRAHSTIKSVPALANLLKSEESANKYFAAQSIASLVCNGSRGTLLSVTNSGAASGLISLLGCADTDIQELLELSEEFSLVRYPDQVALEKLFRVDDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGLLTQLGRDCPPNKTVMVESGALEALTKYLSLGPQDATEEAATDLLGILFSSADIRKHDSAFGAVNQLVAVLRLGGRGARYSAAKALESLFSADHIRNADIARQAVQPLVEILNTGSEREQHAAIAALVGLLSENPSRALAVADVEMNAVDVLYRILSSNCSMDLKGDAAELCCALFGNTRIRSTAAAARCVEPLVSLLATEFSPAHHSVVRALDRLVDDEQLAELVAAHGAVIPLVSLLSGRNYVLHEAISRALVKLGKDRPACKMEMVKAGVIESILDILQEAPDYLLAAFAELLRILTNNATIAKGPRAAKVVEPLFLLLARHDFVPDGQHSAMQVLVNILEHPQCRADYSLTPHKVIEPLIPLLDSPISVVQQLAAELLSHLLLEEHLQKDPVTPKVIAPLIRILGSGIPLLQQRALKALVSIALTWPNEIAKEGGVVEISRVILQADPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSESTVIGALNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNVKIRETKVTKSAILPLSQYLLDPQTQAQHARLLATLALGDLFQNEALARSGDAVSACRALVNVLEDQPTEEMKVVAICALQNLVMYSRPNRRAVAEASGVQVVLDLIGSSNPETSVQAAMFIKLLFSNNTIQEYASSETVRAITATIEKDLWASGTVNEEYLKALNSLFSNFPRLRATEPATLSIPHLVTALKTGSEACQEAALEALFLLRQAWSACPAEVSRAQSIAAADAIPFLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIVKRGNNMRQSVGIPSVYCKITLGNSPPKLTKVVSTGPNPEWEESFTWSFESPPKGQKLHISCKNKSKVGKSKFGKVTIQIDRVVMLGAVAGEYTLLPASKSGPPRNLEIEFQWSNKVSDTTTDTVQQ* 2122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3171 2121 Gene3D C2 domain 1989 2119 IPR035892 -
Mtr8g3171 2121 Gene3D - 1279 1571 IPR011989 -
Mtr8g3171 2121 Pfam C2 domain 1989 2080 IPR000008 -
Mtr8g3171 2121 SMART C2_3c 1990 2086 IPR000008 -
Mtr8g3171 2121 Gene3D - 777 1141 IPR011989 -
Mtr8g3171 2121 Pfam Armadillo/beta-catenin-like repeat 482 521 IPR000225 GO:0005515
Mtr8g3171 2121 Pfam Armadillo/beta-catenin-like repeat 61 91 IPR000225 GO:0005515
Mtr8g3171 2121 Gene3D - 613 776 IPR011989 -
Mtr8g3171 2121 SUPERFAMILY ARM repeat 618 940 IPR016024 -
Mtr8g3171 2121 SUPERFAMILY ARM repeat 1539 1940 IPR016024 -
Mtr8g3171 2121 Coils Coil 254 274 - -
Mtr8g3171 2121 ProSiteProfiles C2 domain profile. 1970 2087 IPR000008 -
Mtr8g3171 2121 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1989 2097 IPR035892 -
Mtr8g3171 2121 SMART arm_5 1188 1229 IPR000225 GO:0005515
Mtr8g3171 2121 SMART arm_5 774 816 IPR000225 GO:0005515
Mtr8g3171 2121 SMART arm_5 225 266 IPR000225 GO:0005515
Mtr8g3171 2121 SMART arm_5 50 92 IPR000225 GO:0005515
Mtr8g3171 2121 SMART arm_5 1357 1397 IPR000225 GO:0005515
Mtr8g3171 2121 SMART arm_5 1272 1311 IPR000225 GO:0005515
Mtr8g3171 2121 SMART arm_5 93 133 IPR000225 GO:0005515
Mtr8g3171 2121 SMART arm_5 1398 1438 IPR000225 GO:0005515
Mtr8g3171 2121 SMART arm_5 482 522 IPR000225 GO:0005515
Mtr8g3171 2121 SMART arm_5 1816 1856 IPR000225 GO:0005515
Mtr8g3171 2121 SMART arm_5 524 564 IPR000225 GO:0005515
Mtr8g3171 2121 SMART arm_5 1440 1480 IPR000225 GO:0005515
Mtr8g3171 2121 SMART arm_5 1143 1186 IPR000225 GO:0005515
Mtr8g3171 2121 SMART arm_5 1689 1728 IPR000225 GO:0005515
Mtr8g3171 2121 SMART arm_5 689 728 IPR000225 GO:0005515
Mtr8g3171 2121 SMART arm_5 268 317 IPR000225 GO:0005515
Mtr8g3171 2121 Gene3D - 1142 1278 IPR011989 -
Mtr8g3171 2121 SUPERFAMILY ARM repeat 984 1119 IPR016024 -
Mtr8g3171 2121 SUPERFAMILY ARM repeat 305 643 IPR016024 -
Mtr8g3171 2121 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 1 2110 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Mtr8g3171 2121 Gene3D - 1572 1988 IPR011989 -
Mtr8g3171 2121 CDD C2 1991 2081 - -
Mtr8g3171 2121 PANTHER CELLULOSE SYNTHASE-INTERACTIVE PROTEIN 1 2110 - -
Mtr8g3171 2121 Gene3D - 368 612 IPR011989 -
Mtr8g3171 2121 Gene3D - 7 363 IPR011989 -
Mtr8g3171 2121 SUPERFAMILY ARM repeat 1143 1527 IPR016024 -
Mtr8g3171 2121 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 493 535 IPR000225 GO:0005515
Mtr8g3171 2121 SUPERFAMILY ARM repeat 24 350 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3171 Mtr-Chr8 42258439 42268331 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3171 453 579 U-box Gene Family AT3G46510 36.296 1.22e-07 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3171 - - mtr:MTR_8g091470 3985.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3171 8 42258439 42268331 Mtr8g3171 8 42258439 42268331 ECH
Mtr8g3171 8 42258439 42268331 Mtr3g2936 3 43228507 43238926 PCT