Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3156 ATGGCAACAACCATAAATATGTACAATAGCAACAAAAACATGACACATGGTTTCTTAGATCCATATAATGAAGAAGAACTAATGAAAGCACTCGAGCCTTTTATGAAAACTAGTTCTTCTTCATCAATCTCTGAACAATCTCCACTTACACCAAATTTGAATCCCAATTACGGAATCCAAGCAAGTTCCATTGGTCTCAACCAACTCACTCCATCACAAATCCTTCAAATTCAAACCCAATTCCAAACCCGCCAACAACAACAACAAAATAAACCCCTTACCCAAAAGCCAGTTCCCATGAAATACTTTGGAATTCCCTCAAAACCAACGAAACTCTACCGTGGAGTTAGACAACGTCATTGGGGAAAATGGGTTGCTGAAATACGACTTCCAAAAAACCGCACGCGTCTATGGTTAGGTACATTTGATACAGCAGAGGAAGCAGCTTTTGCTTATGATAACGCAGCTTATAAGCTTAGAGGTGAATTTTCACGTCTCAATTTTCCTCACATGCGCTTCCATGGAAGCTACAATCCGCTTCCTTCCTCGGTTGATTCAAAACTTCAAGCTATTTGCGAAACTTTAGCTATTTCTCAAAAACAGGGGAACACAGAAAAGCCATGTTCCTCTGTTGAAGATGTAAAGCCTCTGGTACATGTTCCTGCACAATCAATGGGTGAATTCGTGTTTGAGGATTTTAAGGCGTTTTCGTCTATGTCTGATGAATGTTCGCTTGGATTGTCTTCACCAGAATCAGGTCTTACTTTCTTGGATTTCTCAGATTCTAGCCAGTGGGATGAAGTCGAGAATTTTGGGTTGAAGAAGTTCCCTTCTGTTGAAATTGATTGGGAAGCCTTATGA 861 0.4019 MATTINMYNSNKNMTHGFLDPYNEEELMKALEPFMKTSSSSSISEQSPLTPNLNPNYGIQASSIGLNQLTPSQILQIQTQFQTRQQQQQNKPLTQKPVPMKYFGIPSKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAAFAYDNAAYKLRGEFSRLNFPHMRFHGSYNPLPSSVDSKLQAICETLAISQKQGNTEKPCSSVEDVKPLVHVPAQSMGEFVFEDFKAFSSMSDECSLGLSSPESGLTFLDFSDSSQWDEVENFGLKKFPSVEIDWEAL* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3156 286 ProSiteProfiles AP2/ERF domain profile. 112 169 IPR001471 GO:0003700|GO:0006355
Mtr8g3156 286 SUPERFAMILY DNA-binding domain 112 170 IPR016177 GO:0003677
Mtr8g3156 286 Gene3D AP2/ERF domain 112 171 IPR036955 GO:0003700|GO:0006355
Mtr8g3156 286 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 60 285 - -
Mtr8g3156 286 Pfam AP2 domain 113 162 IPR001471 GO:0003700|GO:0006355
Mtr8g3156 286 PRINTS Ethylene responsive element binding protein signature 113 124 IPR001471 GO:0003700|GO:0006355
Mtr8g3156 286 PRINTS Ethylene responsive element binding protein signature 135 151 IPR001471 GO:0003700|GO:0006355
Mtr8g3156 286 SMART rav1_2 112 175 IPR001471 GO:0003700|GO:0006355
Mtr8g3156 286 CDD AP2 111 170 IPR001471 GO:0003700|GO:0006355
Mtr8g3156 286 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 60 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3156 Mtr-Chr8 42115076 42116571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3156 5 286 AP2-EREBP Transcription Factor Family AT4G39780 53.608 3.18e-85 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr8g3156 AP2 8.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3156 K09286 - gmx:100818839 298.516