Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3130 ATGCAAAATCTTACAGAAATCAATCATCAACAAAATACAAATATTCCCCTTCAAAACCTCTCTCAACTAAGCACCGAAATGGATTCTATTCAAAGCTTCATATCCCAATCCATTCAAACAAACACACTCCTCCCCAAACAACACTTAGACTCACTCTCCAACCAAATCTCTTCCACAATTCGTCAAGTCATCATCAACGCAACTGCCCTTCTCGCCACTTGTCCAGAAGCAATAACACTCCCACCAACCGACAGTTACTGGACAAGTGGTGAGAAGATCAATTACATTGATGATGACATGGCGAATCTCACTCATAACGAACATTCCAAAATCGTGGAACTGGACGCAATGGAACTGCTTGCGAAGCACTTCCACTTCTGCGAGATTTGCGGGAAAGGTTTCACGCGCGATGCGAACCTACGTATGCACATGCGTGCGCATGGAGAACAGTTCAAGACACATGAAGCGTTACGTAGCGTGAGGGAAAAGCAAGCGCGCTTAACAACGACGAGATTTTCTTGTCCTTATGAAGGTTGTAAACGTAACAGGTTACACAAGAAGTTCAACCCGTTGAAATCGGTGTTCTGTTTGAGGAACCATTTCAAGAGAAGTCACTGTCCGAAAACTCACACGTGCGATCGGTGTCGGAGGAAGAGTTTTGCGGTGGTGTCGGATTTGAAGAGTCATGTGAAACAGTGTAGGGGAGAGTCCACGTGGAAGTGTTCGTGTGGGACCACGTTTTCTAGGAAGGAGAAATTGTTTGGACACGTGGAGCGGTTTGAAGGACACTCGCCGGCAATTGTTGTTGAAAAGAAAGGAAAATCAATGACGGCGGCGCCGGCAGAAGAGGAAGGTGTGGGTGGATTTTTAACGAAGGAAAATAATTGCATGGATGCTTTGCCGGAAGGAGAAGCATTCATAGTTATTTGCTCTAAAAGCCCCAAGACCTAA 951 0.4543 MQNLTEINHQQNTNIPLQNLSQLSTEMDSIQSFISQSIQTNTLLPKQHLDSLSNQISSTIRQVIINATALLATCPEAITLPPTDSYWTSGEKINYIDDDMANLTHNEHSKIVELDAMELLAKHFHFCEICGKGFTRDANLRMHMRAHGEQFKTHEALRSVREKQARLTTTRFSCPYEGCKRNRLHKKFNPLKSVFCLRNHFKRSHCPKTHTCDRCRRKSFAVVSDLKSHVKQCRGESTWKCSCGTTFSRKEKLFGHVERFEGHSPAIVVEKKGKSMTAAPAEEEGVGGFLTKENNCMDALPEGEAFIVICSKSPKT* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3130 316 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 7 292 IPR044300 GO:0010044|GO:0010447
Mtr8g3130 316 SMART c2h2final6 125 147 IPR013087 -
Mtr8g3130 316 SMART c2h2final6 210 231 IPR013087 -
Mtr8g3130 316 SMART c2h2final6 172 205 IPR013087 -
Mtr8g3130 316 Pfam Zinc-finger of C2H2 type 126 145 - -
Mtr8g3130 316 ProSitePatterns Zinc finger C2H2 type domain signature. 127 147 IPR013087 -
Mtr8g3130 316 Gene3D Classic Zinc Finger 126 149 - -
Mtr8g3130 316 ProSiteProfiles Zinc finger C2H2 type domain profile. 125 152 IPR013087 -
Mtr8g3130 316 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 7 292 - -
Mtr8g3130 316 SUPERFAMILY beta-beta-alpha zinc fingers 123 147 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3130 Mtr-Chr8 41883446 41892706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3130 110 288 C2H2 Transcription Factor Family AT1G34370 51.913 2.72e-66 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr8g3130 zf-met 0.0012 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3130 - - pvu:PHAVU_002G256900g 335.109