Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3106 ATGAAGAGACTTGGAAGCTCTGATTCTTTAGGTGCTCTCATGACAATTTGTCCAACAACAGAAGAAGAGAGTCCAAGGAACAACCAAGTGTATGGAAGGGAATTTCAGTCCATGATGGAAGGACTAGATGAAGAAGGATGTGTTGATGAACCAGGGCAGAAGAAACGAAGACTAAGTGTGGATCAAGTTAAGGCTTTGGAGAAGAATTTTGAAGTTGAAAACAAGCTTGAACCAGATAGGAAAGTTAAGCTTGCTCAAGAGCTTGGTTTGCAACCAAGACAAGTTGCTGTTTGGTTTCAAAACCGTCGTGCTAGATGGAAGACCAAACAATTGGAAAGAGATTATGGTGTTCTCAAAGCCAATTATGATGCACTTAAACTTAATTGTGAGGATCTCCAACGTGACAAAGAAACCTTACTCAAAGAGGTTAAGGAATTGAAATCAAGATTGCAAATACAAGAAGAAAACACAACTACTGAAAGCGATGTTTGTGTGAAAGAAGAGTTGATAACATTGCAAGAATCAGAAAACACAGCTTCTGATGAAACCGCCATTCTTAGATCCGATTCTAAGGACTTAAACAACGATTGTTTCAAAAATGGTGATGGAGTTGCTTCACTATTTCCTGCGGATTTCAAAGACGGTTCTTCAGATAGCGATTCAAGTGCAATCTTGAATGAAGAAAGCAACGCAGCAATTTCTTCATCTGGGGTTCTTCAAAATCACAACTTTTTGATGTCTCCTGGTTCTTCTTCCTTGAAGTTTAATTGTTCTGAATCGTCGTCACCGTCTTCTATGAGTAATTGCTTTCAGTTTCAGACGCAGTTTGTGAAGATGGAAGAGCATAATTTTCTTAGTGCTGATGAGACTTGTGATTTCTTCTCAGATGAACAACCACCAACGCTTCAATGGTATTGTTCAGAGGAGTGGAATTAA 936 0.39 MKRLGSSDSLGALMTICPTTEEESPRNNQVYGREFQSMMEGLDEEGCVDEPGQKKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNCEDLQRDKETLLKEVKELKSRLQIQEENTTTESDVCVKEELITLQESENTASDETAILRSDSKDLNNDCFKNGDGVASLFPADFKDGSSDSDSSAILNEESNAAISSSGVLQNHNFLMSPGSSSLKFNCSESSSPSSMSNCFQFQTQFVKMEEHNFLSADETCDFFSDEQPPTLQWYCSEEWN* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3106 311 ProSitePatterns 'Homeobox' domain signature. 84 107 IPR017970 GO:0000981|GO:0006355
Mtr8g3106 311 CDD homeodomain 53 110 IPR001356 GO:0003677
Mtr8g3106 311 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 1 303 - -
Mtr8g3106 311 SUPERFAMILY Homeodomain-like 48 111 IPR009057 -
Mtr8g3106 311 Coils Coil 108 160 - -
Mtr8g3106 311 ProSiteProfiles 'Homeobox' domain profile. 49 109 IPR001356 GO:0003677
Mtr8g3106 311 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 303 IPR045224 GO:0003700
Mtr8g3106 311 SMART HOX_1 52 113 IPR001356 GO:0003677
Mtr8g3106 311 Gene3D - 52 116 - -
Mtr8g3106 311 Pfam Homeobox associated leucine zipper 109 151 IPR003106 GO:0006355|GO:0043565
Mtr8g3106 311 Pfam Homeodomain 54 107 IPR001356 GO:0003677
Mtr8g3106 311 PRINTS Lambda-repressor HTH signature 80 89 IPR000047 GO:0003677
Mtr8g3106 311 PRINTS Lambda-repressor HTH signature 89 105 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3106 Mtr-Chr8 41623216 41625782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3106 1 311 Homeobox Transcription Factor Family AT2G22430 47.522 2.93e-82 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mtr8g3106 Homeodomain 6.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3106 K09338 - gmx:100796213 421.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3106 8 41623216 41625782 Mtr8g3106 8 41623216 41625782 ECH
Mtr8g3106 8 41623216 41625782 Mtr3g2887 3 42789295 42791665 PCT