Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3105 ATGTACACTCTTATCTCTAACATTCTCTCTCAATCAAATCTCACTACCCTCTTTCTTTCATCAATGGTTTTTCATCTTAGAAATCTCCTTCATTTCTATTACCATGATAGCCCAAACCCTTCTCCTCAACAATCACCTGTTACATACACTCCCTATAACATACTTCATCATTTCCATATCCATGATATCCACACACTTCGTATAGCTATGATGGCCATGGCTTGCTTTGTTACTACGATTATGCTTTTCTTCTTCTTTTTCATATCCATAAGGAACTATCAATCAAGAAGACATAACCATACTCGCGATAGAAGAAACACGCCGGTATTGTTTGATGTCCATGGTTATAGAGATTCTACAATTTCAAATGATGATGATGATGATAATGATGGTGATGAGAGGGTTATTGTTGATCATCCCATATGGTTCATCCGTACGGTAGGGCTTCAACGATCGGTGATAGATTCCATTACAGTCTTCAAATACAGAAAAGACGAAGGACTCGTTGATGGGACAGAGTGTTCTGTTTGTCTAGGTGAATTTCAAGAGGAAGAGAGTCTCAGAATTTTGCCTAAGTGTAGCCACGCTTTTCATATCCCTTGTATTGATACTTGGCTTAGTTCACACAAGAATTGTCCGCTGTGTCGTGCACCTGTTATCAATGATGCTGCAGAGGTGAGTATCACAGTCACTGATCAACTTGATTCAATTTCAAATATTTCTGGTGACACTCAGAATCAAGGACATACAGAAAGCTCTGATAATGCTGTTGGGAGAGGATTAGGGTCACATAATGTAGGAGAGTTTGATATTATTATTAGAGTAGATAATGATGATGGTGATTCTGGTGTATCATCTAGTGAAAGACCAAATAAAAATAATATTGCTTAA 891 0.3771 MYTLISNILSQSNLTTLFLSSMVFHLRNLLHFYYHDSPNPSPQQSPVTYTPYNILHHFHIHDIHTLRIAMMAMACFVTTIMLFFFFFISIRNYQSRRHNHTRDRRNTPVLFDVHGYRDSTISNDDDDDNDGDERVIVDHPIWFIRTVGLQRSVIDSITVFKYRKDEGLVDGTECSVCLGEFQEEESLRILPKCSHAFHIPCIDTWLSSHKNCPLCRAPVINDAAEVSITVTDQLDSISNISGDTQNQGHTESSDNAVGRGLGSHNVGEFDIIIRVDNDDGDSGVSSSERPNKNNIA* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3105 296 MobiDBLite consensus disorder prediction 239 260 - -
Mtr8g3105 296 SMART ring_2 174 215 IPR001841 -
Mtr8g3105 296 PANTHER RING-H2 FINGER PROTEIN ATL54 38 258 - -
Mtr8g3105 296 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 225 IPR013083 -
Mtr8g3105 296 MobiDBLite consensus disorder prediction 277 296 - -
Mtr8g3105 296 Pfam Ring finger domain 173 216 IPR001841 -
Mtr8g3105 296 CDD RING-H2_PA-TM-RING 173 216 - -
Mtr8g3105 296 MobiDBLite consensus disorder prediction 239 259 - -
Mtr8g3105 296 SUPERFAMILY RING/U-box 153 222 - -
Mtr8g3105 296 ProSiteProfiles Zinc finger RING-type profile. 174 216 IPR001841 -
Mtr8g3105 296 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 38 258 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3105 Mtr-Chr8 41607818 41609158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3105 128 241 C3H Transcription Factor Family AT4G33565 58.772 7.79e-42 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3105 - - mtr:MTR_8g089880 549.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3105 8 41607818 41609158 Mtr8g3105 8 41607818 41609158 ECH