Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3085 ATGTCGGAGAGTAACGACCGCGCCGCCACCGGTGGTGGCGGTAGTGGTTACCGGAGTACATTTTCACGGTCAGTTTCATGGACAGACTGTTCACCTTCAAACAGAAGGCCGCCAACACCGTCGGCGGCGGTGAAAAACAAACAACGATCGTTGCTTCCACCGCTTCGTCCTCTTTCCATCAACAAACGCAGCATTGGAGAATGGCCAAGTGCTGGATCTGACGATCTCGGTGTTTGGCCAGAGACACCAAGAGGAAGAGGTTCAATCACTGGTTCAGAGTTTCAGTTCACAAGAGACAGGTTAGCTTTCTATGACAAAGAATGTTCCAGAATCGCTGAACATGTTTACCTAGGAAGCGACACAGTGGCGAAGAATCATGAGGTTTTAAGAAAGAATGGGATTACTCACGTGCTTAATTGTGTTGGGTTTGTCTGTCCTGAATATTTCAAAAGTGAATTTGTCTATAAAACTCTTTGGTTGCAGGATAGTCCAACAGAAGATATAACAAGTATTTTGTATGATGTTTTTGATTATTTTGAGGATGTTAGATTACAAGGTGGTCGTGTTCTTGTTCATTGTTGTCAAGGTGTTTCTAGATCAACCTCTTTGGTTATTGCTTATCTTATGTGGAGAGAAGGACAAAGCTTTGAAGATGCTTTTCATTATGTCAAGAATGCTCGTGGTGTTACAAATCCTAACATGGGTTTTGCTTGTCAACTTTTGCAGTGTCAGAAAAGAGTGGTAAATGTTAATTCAAATGCTAATGCAAATGTTAATGCTATGCCTTCAAGTCCTAATTCTGTTCTTAGGATGTTTAGAATGGCACCTCATTCACCTTATGATCCTCTTCATTTGGTACCTAAAATGGTTAATAAGCCTTGTGCTAAAGAGCTTGATTCTCGCGGTGCTTTTATTGTTCATGTACCTTCTGCTATATATGTTTGGATTGGTAAAAATTGTAGTTCTGTTATGTGTTGTAATGCACGATCGGCAGCTACACAGGTTGTTCGTTACGAGAAAGCAAATGCTCCAATTCTTTGCATTTGTGAAGATGAAGAGCCAATGGAGTTTTGGGTTGCTCTTTCTAACCAGCAATTATTGTTGGGGAGTTCTGATAAGAAAGAGGTGTTGGGAAAGGATTCTGATGAAAGAATGGAGATTGATGGTGATGGTGTTGTTGATATGGGGATTCATCCTAGAAAAGTTGATGAGTATGATTTGGATTTTGGGATTTTTCACAAAGCACTTGCAGGGGGTGTTGTTCCACCTTTTTCTGTATCTAATACAGGATCAGAAACCTTGCTTCCTGCTAGAGAAAATAGCTGGGGAAGACTAAGGAGGAAGCTTGCTAATGGTATCATGAAAGGTTTGTTTACATCTTCCAAATGCTGTGATACAACCTCTCCAAAAGATGAATTAAAGGTGAGTGTGGAAGAAGAAGAAAAACAACATTCTGTTGTTGATTCTTTTCCACCTTCCTCAAAGCATCTTTCTGGTTCATCTGGTTACTTAGACTATATTATAGATAGCAGCTCGGGCAAGGCAAGAGATGGCCCTGTACTCGTTGATCGCCTTGTTCCTAGTGTTGGGTCGTCGTTGCCACCAACTCCTCGTCGAAAATCAGATTCTTTTCACTGTTCTCTAAGTAACAGCCCGAAATTCTGTTCCAAGTCGCTGACACTTTCTCCTTCCAATTCTGATTGTGATAGTTCCTTTACATTTTCGCCTGCATCTACAAATTGGTCTGATTTGTCATTCATGTCCTCTCGGCCGCCATCGCCTTCTTTTGGACTTGATTCAGCTGAACAACCTTTTTATGTTAAAGATGCATCTTTCTTAGAAAGATCCTCTTCACTTCGCAAAGATGCTGCTGTCCCTTCATCTTCAGAGACAATTTTGTTTAATCACACCATGGTAGGGAGAAAAGGGTCTAACTCTAAACCCTCCATTGCAGAGCGCAGAGGGAGTAAACCGCCGCCTCAAATGTTGGTATCTTCTGTCAGCGAATCATCCCGTGCTCACAAAGTTCTGGTAAGATCACAGACATTCACTTTGCCTGCCCGAGACGATAATTTGATGAAGTAG 2085 0.4177 MSESNDRAATGGGGSGYRSTFSRSVSWTDCSPSNRRPPTPSAAVKNKQRSLLPPLRPLSINKRSIGEWPSAGSDDLGVWPETPRGRGSITGSEFQFTRDRLAFYDKECSRIAEHVYLGSDTVAKNHEVLRKNGITHVLNCVGFVCPEYFKSEFVYKTLWLQDSPTEDITSILYDVFDYFEDVRLQGGRVLVHCCQGVSRSTSLVIAYLMWREGQSFEDAFHYVKNARGVTNPNMGFACQLLQCQKRVVNVNSNANANVNAMPSSPNSVLRMFRMAPHSPYDPLHLVPKMVNKPCAKELDSRGAFIVHVPSAIYVWIGKNCSSVMCCNARSAATQVVRYEKANAPILCICEDEEPMEFWVALSNQQLLLGSSDKKEVLGKDSDERMEIDGDGVVDMGIHPRKVDEYDLDFGIFHKALAGGVVPPFSVSNTGSETLLPARENSWGRLRRKLANGIMKGLFTSSKCCDTTSPKDELKVSVEEEEKQHSVVDSFPPSSKHLSGSSGYLDYIIDSSSGKARDGPVLVDRLVPSVGSSLPPTPRRKSDSFHCSLSNSPKFCSKSLTLSPSNSDCDSSFTFSPASTNWSDLSFMSSRPPSPSFGLDSAEQPFYVKDASFLERSSSLRKDAAVPSSSETILFNHTMVGRKGSNSKPSIAERRGSKPPPQMLVSSVSESSRAHKVLVRSQTFTLPARDDNLMK* 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3085 694 SMART dsp_5 107 246 IPR020422 GO:0006470|GO:0008138
Mtr8g3085 694 PANTHER MKPA PROTEIN 25 667 - -
Mtr8g3085 694 SUPERFAMILY Actin depolymerizing proteins 264 368 - -
Mtr8g3085 694 CDD DSP 108 242 - -
Mtr8g3085 694 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 166 227 IPR000387 GO:0016311|GO:0016791
Mtr8g3085 694 MobiDBLite consensus disorder prediction 1 50 - -
Mtr8g3085 694 Gene3D Severin 270 366 IPR029006 -
Mtr8g3085 694 Gene3D Protein tyrosine phosphatase superfamily 91 248 IPR029021 -
Mtr8g3085 694 MobiDBLite consensus disorder prediction 1 46 - -
Mtr8g3085 694 SMART VILL_6 270 364 IPR007122 GO:0051015
Mtr8g3085 694 ProSiteProfiles Dual specificity protein phosphatase domain profile. 107 249 IPR020422 GO:0006470|GO:0008138
Mtr8g3085 694 MobiDBLite consensus disorder prediction 639 673 - -
Mtr8g3085 694 Pfam Dual specificity phosphatase, catalytic domain 115 245 IPR000340 GO:0008138|GO:0016311
Mtr8g3085 694 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 25 667 - -
Mtr8g3085 694 MobiDBLite consensus disorder prediction 478 498 - -
Mtr8g3085 694 ProSitePatterns Tyrosine specific protein phosphatases active site. 191 201 IPR016130 GO:0016311|GO:0016791
Mtr8g3085 694 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 99 250 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3085 Mtr-Chr8 41428215 41430900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3085 37 143 Protein tyrosine phosphatase (PTP) family AT3G55270 45.161 5.48e-30 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3085 - - gmx:100782633 810.061
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3085 8 41428215 41430900 Mtr8g3085 8 41428215 41430900 ECH
Mtr8g3085 8 41428215 41430900 Mtr3g2870 3 42666569 42670660 PCT