Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3054 ATGCAGAGCCAACTTGTGTGTAATGGTTGTAGGAACACGTTGCTTTACCCTAGAGGTGCAACCAATGTTTGTTGTGCATTGTGCAACACAATTACCGCTGTTCCTCCACCTGGGATGGATATGTCTCAATTATATTGTGGAGGCTGTAGGACATTGTTAATGTACACACGCGGAGCTACAAGTGTCAGATGTTCTTGTTGTCATACTGTAAACCTTGCTCCAGTATCAAATCAAGTAGCCCATGTCCCTTGTGGGAACTGCCGGACAACACTTATGTATCCTTATGGAGCTCCTTCAGTCAAATGTGCTGTTTGTCACTATATTACTAATATCAATATGTCCAATGGAAGGCTTCCAATTCCTGGTCATAGACCTCATGGGACAACCGACTCGGGAATGTTACCTTCTACTTCAACGTCAATGCCCCAATCTCAGAGCCAAACAGTGGTGGTAGAAAATCCAATGTCTGTTGATTCAAGTGGGAAATTGGTGAGCAATGTTGTTGTTGGTGTTACAACAGATAAGAAATAA 531 0.4294 MQSQLVCNGCRNTLLYPRGATNVCCALCNTITAVPPPGMDMSQLYCGGCRTLLMYTRGATSVRCSCCHTVNLAPVSNQVAHVPCGNCRTTLMYPYGAPSVKCAVCHYITNINMSNGRLPIPGHRPHGTTDSGMLPSTSTSMPQSQSQTVVVENPMSVDSSGKLVSNVVVGVTTDKK* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3054 176 Pfam LSD1 zinc finger 46 70 IPR005735 -
Mtr8g3054 176 Pfam LSD1 zinc finger 84 108 IPR005735 -
Mtr8g3054 176 Pfam LSD1 zinc finger 7 31 IPR005735 -
Mtr8g3054 176 PANTHER PROTEIN LSD1 1 176 IPR040319 -
Mtr8g3054 176 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 81 110 IPR005735 -
Mtr8g3054 176 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 4 34 IPR005735 -
Mtr8g3054 176 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 43 72 IPR005735 -
Mtr8g3054 176 MobiDBLite consensus disorder prediction 121 142 - -
Mtr8g3054 176 PANTHER PROTEIN LSD1 1 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3054 Mtr-Chr8 41183052 41187901 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Mtr8g3054 zf-LSD1 8.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3054 - - mtr:MTR_8g089310 366.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3054 8 41183052 41187901 Mtr8g3054 8 41183052 41187901 ECH