Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3052 ATGAAACAGTTGAAATTGGATGCATATTATCACGTCAAAGAGGATAATCCTTTTAGGCACGAAACAAACATGGAAAATACACTTGAATCTTCCATCAATCCACAACACAAAAAGATATCATCCAGATGGGATCCAGTCGAAGCATGTCGGCCTATAATCGGTGAAACACCTGTGTTTTATCCAACGTTTGAGGAGTTTGAAGACACGCTTGGTTACCTAGCTAAGATACGTCCCTTAGCTGAACCGTATGGCATATGTAAAATTGTCCCTCCAGCTTGCTGGTCTCCACCTTGCCCTCTTAAGGAGAAAGAGATATGGGAAAATGCTAAATTTCCGACCCGTATTCAGCAAGTTGATTTGCTTCAGAACCGGGAGCCGATGAGAAAGAAAAGTAGGGGAAGGAAACGAAGACGTGGAAAGCAGTCAAAGATGGGAACATGTAATAGGAGAACTGGAAATTCATGTTCTGAAGCTAATGCTACTTCCGAATCTGATGATACGTTTGGATTCCAATCAGGGCCAGACTTCACACTTAAAGAATTTCAGCAATATGGAAATTCTTTTAAAGATTGCTACTTTGGGTTGAGTGATGCCAAAGATGGTAAAGGTAGCGATAATAATCTCCATGAGAGACGACAACCGTCTTTGGAGGATATTGAAGGTGAATACTGGCGAATAATAGAGAAACCGACCGATGAGGTCGAGGTGTATTATGGAGCTGACTTGGAAACTGGAGCACTTGGAAGTGGTTTTCCTAAGACATCATCCTTAACTGAGAGTGATTCCGATTTGTATGCTATGTCTGGCTGGAATTTGAATAACTTTGCGCGACTTCCAGGTTCTGCATTATGTTTTGAAGGAAGTGACATCTCAGGGGTTTTAGTTCCATGGCTGTATGTTGGAATGTGCTTTTCCTCATTTTGCTGGCATGTTGAAGATCATCACCTCTATTCACTTAATTATCTGCACTGGGGTGACCCAAAAGTATGGTATGGTGTACCTGGGAGTCATGCTTCAGCTATAGAAGATGCAATGAGGAAACATTTGCCTGATTTGTTTGAAGAGCAACCAAATCTACTCAACGAGTTGGTGACTCAGTTCTCTCCTTCAATACTTAAGTCCGAGGAGGTTCCTGTGTATCGCACTGTCCAGCATTCTGGGGAATTTGTTATCACGTTTCCAAGGGCATACCACTGTGGCTTCAGCAGTGGCTTCAATTGTGCAGAGGCTGTGAATGTGGCTCCATATGATTGGTTTATGCATGGTCAGAACGCTGCAGAGATTTACAGTCTACAGTGCCGTAAGACATCCTTGTCCCATGATAAGTTGTTATTTGGATCTGCTAAGGAAGCTGTACATGGCCTTTCAGAGACAACTCTTAATGGAAAAGAAAATCTAAAATGTTTAAATTGGAGAAATGCTTGTGGGAAAGATGGTGTTCTTACCAATGCAGTTAAGACAAGGATAATGATGGAAAAAGAGAGGCTTGAATGGCTTCCGAATCATTTAAAGATGCTGAAGATGGACAATGACTTCGATTCGGTTGAGGAAAGGGAATGTTACTATTGCTTCTATGACTTGCACCTCTCTGCTGTTGGTTGCGAGTGCTTTCCTGACAACTATTCATGTCTTAGACATTTCAAGTTGTTTTGCTCATGCGAAATGGATAAAAGATTTGTTCTGGTTCGTTATACAATAGATGAGCTAAGTACATTGGTTGAAGCATTAGAAGGAGAACCACGTGCAATAGAAGCGTGGGAAACTAGAAACATTGGAGTTGTTTCTGCTAGTGTTGAGGATGCTTGCATGCACGAACAAGATATGGAGAGAGTCATGTGCAAAACTGAGAATTACAAAGAATGGAAAATATCGCCTTCTTGTACAGGAACTTATGAGAGGTTAAATTCAAATTTACCTAGCAGTCCTCACAGTCACATTTCTTCAGAGTTGGTCCATTCAGAGGCTCATCATGAAACTTCTCGTACACCTTATGTGGATCTGACTGGTGATATGGACAACATGAATGATACTATGTTGGTCATGGACAATAAAGTTAAGGAGGATAAGGGAAGTTCTTTGTATTTGAATATTGGTGATATCTCTGATAAACCTGAAAATTCTTTGCTAAATATAGCCGAAATCCATCACAATAAGTGTGTTCCATATGCGGAAAAAGTTACTAGTGCAGAGATCAGAAAAGAACGAGACAACATAGAACTTAGTGCTGGTGGTATGTCTGTCTTGGAAAATGAACCTTCACCATGTCCAACTAATGTTCGAAATTCCGGTACACTTGATGGTTATAAATTGTTTGGTGTCAATCTGCAAATGCACTCAGATTTAGGACAGAAACTCAATAGTACATTTGAAACGGGAGTTCTAGACACCTCCAATACAAGTATATCTTTGACAAACCAAAGCTCCCCAATGAAAAAGTTTAGTATTTCGGTTGTGCTTGTTAGTTTGGGATCTGTTGTGTATAGAAAACATTGGTGCAGTAAGCATGCAATATATCCAAAAGGATTCAAGAGTCGTGTAAAGTTCTTTAGCATTCTTGATCCAGCAAGCATCTGTAACTATGTTTGTGAAGTCATTCCTGGTGGATTTCTTGGCCCTTTTTTCAGGGTTACTTTGGAAGAACACCCCAACGAGCTTTTCACAAACACCTCAGCAGATAAGTGCTGGGAATCTGTTATTGATAGACTAACCTATGAAATAAATAAGTGCAAGAGTCTCGGTGAACTAGACATGCCTCCCTTGGAGCTACTGCACAACATCAATGGTCATAAAATGTTTGGATTCCTTTCGCCGTCCATTATTCAGTCCATTGAAGCTCAAGATCCCAGTCAAGAATGTGTAGAGTACTGGAATCACAAACAAGTTAATTCTGGATCTTCAGGCAAAGCAATTGATGACTCTAAGTTAACTTGTGGTTCAAGTAATAGCTCTCTAGGTGACTCGAGGACCAAACTTTTTGGTGTCGATTTGATAAAGCTGGAGGAGGATGACATAGGAGAAAGTTATCATTCGTTTGAAGAGATGAAGTTGATTCTAGAAAGATTCCTGAAAAGGGGAAGTCCTGACGAGTTACGAGCAATGCGCCAGTTATTCAGTTCTGATGCACAATTAACTCAGTGGAGAGCTGCGCTGAAAGTGCTGATAGAGAAAATCCAGAAAGATTGTGAATAA 3189 0.4058 MKQLKLDAYYHVKEDNPFRHETNMENTLESSINPQHKKISSRWDPVEACRPIIGETPVFYPTFEEFEDTLGYLAKIRPLAEPYGICKIVPPACWSPPCPLKEKEIWENAKFPTRIQQVDLLQNREPMRKKSRGRKRRRGKQSKMGTCNRRTGNSCSEANATSESDDTFGFQSGPDFTLKEFQQYGNSFKDCYFGLSDAKDGKGSDNNLHERRQPSLEDIEGEYWRIIEKPTDEVEVYYGADLETGALGSGFPKTSSLTESDSDLYAMSGWNLNNFARLPGSALCFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGSHASAIEDAMRKHLPDLFEEQPNLLNELVTQFSPSILKSEEVPVYRTVQHSGEFVITFPRAYHCGFSSGFNCAEAVNVAPYDWFMHGQNAAEIYSLQCRKTSLSHDKLLFGSAKEAVHGLSETTLNGKENLKCLNWRNACGKDGVLTNAVKTRIMMEKERLEWLPNHLKMLKMDNDFDSVEERECYYCFYDLHLSAVGCECFPDNYSCLRHFKLFCSCEMDKRFVLVRYTIDELSTLVEALEGEPRAIEAWETRNIGVVSASVEDACMHEQDMERVMCKTENYKEWKISPSCTGTYERLNSNLPSSPHSHISSELVHSEAHHETSRTPYVDLTGDMDNMNDTMLVMDNKVKEDKGSSLYLNIGDISDKPENSLLNIAEIHHNKCVPYAEKVTSAEIRKERDNIELSAGGMSVLENEPSPCPTNVRNSGTLDGYKLFGVNLQMHSDLGQKLNSTFETGVLDTSNTSISLTNQSSPMKKFSISVVLVSLGSVVYRKHWCSKHAIYPKGFKSRVKFFSILDPASICNYVCEVIPGGFLGPFFRVTLEEHPNELFTNTSADKCWESVIDRLTYEINKCKSLGELDMPPLELLHNINGHKMFGFLSPSIIQSIEAQDPSQECVEYWNHKQVNSGSSGKAIDDSKLTCGSSNSSLGDSRTKLFGVDLIKLEEDDIGESYHSFEEMKLILERFLKRGSPDELRAMRQLFSSDAQLTQWRAALKVLIEKIQKDCE* 1063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3052 1062 MobiDBLite consensus disorder prediction 121 167 - -
Mtr8g3052 1062 ProSiteProfiles FYR domain FYRN motif profile. 809 867 IPR003888 GO:0005634
Mtr8g3052 1062 PANTHER LYSINE-SPECIFIC DEMETHYLASE 10 1061 - -
Mtr8g3052 1062 MobiDBLite consensus disorder prediction 128 144 - -
Mtr8g3052 1062 Gene3D - 814 953 - -
Mtr8g3052 1062 ProSiteProfiles JmjC domain profile. 267 430 IPR003347 -
Mtr8g3052 1062 MobiDBLite consensus disorder prediction 145 167 - -
Mtr8g3052 1062 Pfam JmjC domain, hydroxylase 297 413 IPR003347 -
Mtr8g3052 1062 SMART fyrn_3 823 867 IPR003888 GO:0005634
Mtr8g3052 1062 Pfam jmjN domain 57 90 IPR003349 -
Mtr8g3052 1062 SMART cupin_9 267 430 IPR003347 -
Mtr8g3052 1062 PANTHER DEMETHYLASE JMJ14-LIKE PROTEIN, PUTATIVE-RELATED 10 1061 - -
Mtr8g3052 1062 Gene3D Cupin 41 414 - -
Mtr8g3052 1062 SMART JmjN_1 55 96 IPR003349 -
Mtr8g3052 1062 ProSiteProfiles FYR domain FYRC motif profile. 869 959 IPR003889 GO:0005634
Mtr8g3052 1062 Pfam F/Y rich C-terminus 871 958 IPR003889 GO:0005634
Mtr8g3052 1062 SUPERFAMILY Clavaminate synthase-like 177 447 - -
Mtr8g3052 1062 Pfam F/Y-rich N-terminus 816 864 IPR003888 GO:0005634
Mtr8g3052 1062 SMART fyrc_3 873 966 IPR003889 GO:0005634
Mtr8g3052 1062 Pfam C5HC2 zinc finger 520 572 IPR004198 -
Mtr8g3052 1062 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3052 Mtr-Chr8 41162943 41172610 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3052 780 997 JUMONJI Transcription Factor Family AT1G30810 44.954 8.39e-48 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Mtr8g3052 JmjC 2.8e-44 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3052 - - gmx:100784581 1537.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3052 8 41162943 41172610 Mtr8g3052 8 41162943 41172610 ECH