Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3004 ATGATGGAAGTTGGAGGAAATGCATCTGCCAATTCAATTTATGAGGCTTTTATTCCGGAAGGATATACAAAACCTGGACCAGATGCCAGTCATGAAGAACGTGCAAAATTCATCAGGTCAAAGTATGAGCGTCAAGAATTTTTGAAACATAGTTTGCGCATTTTATCAACAAAAAGCAAACGTCAAACAAGTTTCTCCAAAAAGATCATGGATAGCTTTCGAAAATCTAGTGGTTCAAAGAATATGGAAGGAATGGTAGAATTTATTGGAATGCTGAAAGTGAAAGTGGTCAAAGGCACAAATTTAGCAATCAGAGATATGAGGACAAGTGATCCATATGTTGTTTTGAAGCTTGGCCAACAGACTGTTCAGACGACTGTAATAAGGAGCAATTTGAATCCGGTTTGGAACGAGGAACTTATGTTGTCCGTTCCTCAGCAATTTGGACCAATAAGTTTGGAGGTATTTGATCATGACTTGTTCTCAGCTGATGATATAATGGGAGAAGCGCAGATTGATCTTCAACCTTTAATAAATTCTGCAATGGCATTTGGAGATACTGGAATGTTTGATGATATGCGAATAGGAAAATGGCTGAGATCTAATGACAATGCACTTATAGAGGATAGCATAGTCAATATCATTGATGGTAAGGTTAAACAAGAGATGTTTATTAAGCTCCAGAATGTCGAATGTGGAGAATTAAACTTAGAACTTGAGTGGATGTCTCTTGATCATTAG 741 0.3725 MMEVGGNASANSIYEAFIPEGYTKPGPDASHEERAKFIRSKYERQEFLKHSLRILSTKSKRQTSFSKKIMDSFRKSSGSKNMEGMVEFIGMLKVKVVKGTNLAIRDMRTSDPYVVLKLGQQTVQTTVIRSNLNPVWNEELMLSVPQQFGPISLEVFDHDLFSADDIMGEAQIDLQPLINSAMAFGDTGMFDDMRIGKWLRSNDNALIEDSIVNIIDGKVKQEMFIKLQNVECGELNLELEWMSLDH* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3004 246 CDD C2_ArfGAP 89 233 - -
Mtr8g3004 246 ProSiteProfiles C2 domain profile. 72 187 IPR000008 -
Mtr8g3004 246 SUPERFAMILY ArfGap/RecO-like zinc finger 1 49 IPR037278 -
Mtr8g3004 246 Gene3D Arf GTPase activating protein 1 55 IPR038508 -
Mtr8g3004 246 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 1 246 IPR044518 GO:0005096|GO:0005543
Mtr8g3004 246 SMART C2_3c 91 186 IPR000008 -
Mtr8g3004 246 Gene3D C2 domain 88 246 IPR035892 -
Mtr8g3004 246 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 88 243 IPR035892 -
Mtr8g3004 246 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 1 246 - -
Mtr8g3004 246 Pfam C2 domain 91 180 IPR000008 -
Mtr8g3004 246 PRINTS C2 domain signature 106 118 IPR000008 -
Mtr8g3004 246 PRINTS C2 domain signature 130 143 IPR000008 -
Mtr8g3004 246 PRINTS C2 domain signature 151 159 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3004 Mtr-Chr8 40660782 40664268 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3004 1 246 C2H2 Transcription Factor Family AT4G21160 69.804 8.72e-130 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3004 K12486 - gmx:100777084 388.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3004 8 40660782 40664268 Mtr8g3004 8 40660782 40664268 ECH