Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2983 ATGCCGCGTAAAGTAAACTATGGAATCGATTACTACGACGATGACTATGAGGATTATGATGACTATGATTATGATGTTGAAGCTGAAAATTATGGAGTAGAATCTGATACAAAGAAAGAGACCATTAAGCCTGGAGTTTGGAGTTGCTCAATTTGTACCTATGACAATGATGAGAGTATGACTTCATGTGATATTTGCGGCGTTCTACGTCATCCCTTGGTTATCAATGGAACTTCCAACACCAACAAAACAGTTGAAGATATAAACAAAACTCCTGGAGCATCCAAGTTGGCCCAGTCTCTTTTTCAATCATTACCACAACAGAGTCCCAAAGAGGTTGCGATATTTCCAATGCAAGACATTGGTTTTTGGACAGATGGCAGTAACATCTACAAGCTTGAGAATGTCCAAGGAGAATTTCATGAAATTCATAAGGCTTTTAATGCTCAAAGCCATCCCTCTTTAAATATAGATCCTTTCAAGTTTGACGTTCCATCCCCAGATGATGTGGTTCATACCGGCCTACATTCTTCAAAAATGGGTTTGAAAGACAAAGTTAAAAACTCTAAAGATTCTCGGCTTTCATCAAGCAGCAGAGAGAAGAATGAACTAGAAACCAATACTGAAAGTGCAGACAACTTATCGTCCTTAATGCAAAAGAACAAGCTTTCCAAAAATGTAGAAATTGATCACGAAAAATTTGGTAAAACTTCAAACAGCTTATCAGCCTCTTTGCCAAAGGACAAAGGAAACAATGCGAATAAAATAAATTCTTCAAAAAATGGTACAAATGGTATCCAATCAAGCGAAGAAAAGTCTGGTAGTTTGTCTGCACTGCCAAAAGTTGAAGAGAGTGATAAACTTAGTTTGTCTTCTAACAAAGACGGAAAGTCTGAAAGTGCTTCCAGCAGTTTTAACCACACGGTTCCTGATGCAAGATCTCAAAATTCTGATAATACTAATGCTAAGGGACCTCATCAACAAGTTTCTTACCAGCCAGAAAAGTGGATGCTTCCTCAACAATCTGAAGATACGTTGACTCAGTTGAATCTCGCAATTGTTGGTCATGTTGATTCTGGAAAATCAACACTATCTGGTAGGTTATTACACCTATTGGGACGAATTTCCAAGAAAGAAATGCACAAATATGAAAAGGAGGCCAAGTTACAGGGCAAAGGATCCTTTGCTTATGCTTGGGCACTTGATGAAAGTTCTGAAGAAAGGGAAAGGGGAATAACCATGACAGTGGCTGTGGCATATTTTGACACTAAGAAATATCACGTTGTTGTGCTTGACTCTCCTGGTCATAAAGATTTTATCCCAAACATGATTTCTGGAGCTACACAAGCTGATGCTGCAGTTCTTGTTATAGATGCGTCACTTGGTGCATTTGAAGCTGGTATGGATGGTGGCAAAGGACAAACAAGAGAGCATGCACAACTTATTAGAAGTTTCGGTGTAGACCATGTTATAGTTGCAGTAAATAAGATGGATGCTGTGTCATACTCCAAAGACCGATTTGATTTTATAAGACATCAGCTGGGAATGTTTCTCCGCTCATGTGGGTTCAAAGATTCTTCACTCTCATGGATTCCCTTGAGTGCCATGGAAAATCAAAATTTGGTAGCATCCCCTTCTGATGCTCATTTCAAAAACTGGTATACTGGACCTTATCTGTTAGATGCAGTTGACTCACTACAACCTCCTACTAGAGAATTCGCAAAACCTCTGCTAATGCCAATATGTGATGTTATCAAATCAACTGCACAAGGACAGGTGTCTGCTTGTGGGAAACTGGAAGCAGGAGCTCTTCGAAGTGGAACAAAGGTGTTAGTTAGGCCTTCAGATGTTGTTGGAACAGTACGTACATTGGAGCGTGACTCTAACGTCTGCTCTGTTGCAAGAGCTGGAGATAATGTAGCTGTAACCTTGCATGGTGTTGACGGAAGTCATGTATTGGCTGGAGGCGTATTATGCCATCCTGACTTTCCTGTTGCAGTTGCAAAGCATTTGGAGTTGAAATTGCTTGTCTTGGATGGTACAAGTCCCATATTGATCGGCGCTCAGTTAGAGTTTCACATACATCATGCAAAAGAGCCTGCTAGAGTTTCAAGAATATTGTCAGTACTTGATCCCAAGACTGGTAAGGTGACCAAAAAGAACCCTCGTTGTCTCACGTCAAAACAAAGTGCAGTAATTGAGGTGATTTTGCATGAGCCAGTCTGTGTGGTAGAGTTTTCTAGATGTAAAGCTCTTGGAAGAGTATCCCTTAGATCTTTAGGAAGAACAATTGCTGTTGGACTTGTGTCAAGAATAATCGAAGAACAAGATTAG 2334 0.4006 MPRKVNYGIDYYDDDYEDYDDYDYDVEAENYGVESDTKKETIKPGVWSCSICTYDNDESMTSCDICGVLRHPLVINGTSNTNKTVEDINKTPGASKLAQSLFQSLPQQSPKEVAIFPMQDIGFWTDGSNIYKLENVQGEFHEIHKAFNAQSHPSLNIDPFKFDVPSPDDVVHTGLHSSKMGLKDKVKNSKDSRLSSSSREKNELETNTESADNLSSLMQKNKLSKNVEIDHEKFGKTSNSLSASLPKDKGNNANKINSSKNGTNGIQSSEEKSGSLSALPKVEESDKLSLSSNKDGKSESASSSFNHTVPDARSQNSDNTNAKGPHQQVSYQPEKWMLPQQSEDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRISKKEMHKYEKEAKLQGKGSFAYAWALDESSEERERGITMTVAVAYFDTKKYHVVVLDSPGHKDFIPNMISGATQADAAVLVIDASLGAFEAGMDGGKGQTREHAQLIRSFGVDHVIVAVNKMDAVSYSKDRFDFIRHQLGMFLRSCGFKDSSLSWIPLSAMENQNLVASPSDAHFKNWYTGPYLLDAVDSLQPPTREFAKPLLMPICDVIKSTAQGQVSACGKLEAGALRSGTKVLVRPSDVVGTVRTLERDSNVCSVARAGDNVAVTLHGVDGSHVLAGGVLCHPDFPVAVAKHLELKLLVLDGTSPILIGAQLEFHIHHAKEPARVSRILSVLDPKTGKVTKKNPRCLTSKQSAVIEVILHEPVCVVEFSRCKALGRVSLRSLGRTIAVGLVSRIIEEQD* 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2983 777 ProSiteProfiles Zinc finger RanBP2 type profile. 43 72 IPR001876 -
Mtr8g2983 777 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 346 577 IPR000795 GO:0003924|GO:0005525
Mtr8g2983 777 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 348 591 IPR027417 -
Mtr8g2983 777 Gene3D - 337 570 IPR027417 -
Mtr8g2983 777 CDD EF1_alpha 350 569 - -
Mtr8g2983 777 MobiDBLite consensus disorder prediction 294 329 - -
Mtr8g2983 777 SUPERFAMILY Ran binding protein zinc finger-like 45 70 IPR036443 -
Mtr8g2983 777 MobiDBLite consensus disorder prediction 236 275 - -
Mtr8g2983 777 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 669 773 IPR009001 -
Mtr8g2983 777 CDD HBS1_C_III 664 772 - -
Mtr8g2983 777 PANTHER TRANSLATION FACTOR 48 775 - -
Mtr8g2983 777 Pfam Elongation factor Tu C-terminal domain 668 772 IPR004160 -
Mtr8g2983 777 Gene3D Translation factors 667 777 - -
Mtr8g2983 777 Gene3D Translation factors 574 663 - -
Mtr8g2983 777 PANTHER OS04G0595300 PROTEIN 48 775 - -
Mtr8g2983 777 PRINTS GTP-binding elongation factor signature 350 363 IPR000795 GO:0003924|GO:0005525
Mtr8g2983 777 PRINTS GTP-binding elongation factor signature 409 417 IPR000795 GO:0003924|GO:0005525
Mtr8g2983 777 PRINTS GTP-binding elongation factor signature 429 439 IPR000795 GO:0003924|GO:0005525
Mtr8g2983 777 PRINTS GTP-binding elongation factor signature 445 456 IPR000795 GO:0003924|GO:0005525
Mtr8g2983 777 PRINTS GTP-binding elongation factor signature 490 499 IPR000795 GO:0003924|GO:0005525
Mtr8g2983 777 SUPERFAMILY Translation proteins 568 663 IPR009000 -
Mtr8g2983 777 MobiDBLite consensus disorder prediction 173 216 - -
Mtr8g2983 777 Pfam Elongation factor Tu GTP binding domain 349 565 IPR000795 GO:0003924|GO:0005525
Mtr8g2983 777 ProSitePatterns Zinc finger RanBP2-type signature. 47 66 IPR001876 -
Mtr8g2983 777 MobiDBLite consensus disorder prediction 229 329 - -
Mtr8g2983 777 MobiDBLite consensus disorder prediction 178 207 - -
Mtr8g2983 777 Gene3D - 39 83 - -
Mtr8g2983 777 SMART zf_4 45 69 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2983 Mtr-Chr8 40472123 40481065 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2983 45 82 Eukaryotic Initiation Factors Gene Family AT5G10630 63.158 1.07e-10 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2983 K14416 - gmx:100801724 1217.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g0640 2 6432864 6436036 Mtr8g2983 8 40472123 40481065 PCT