Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2982 ATGGGAATCCATGGTCTGTTACCGCTACTCAAATCAATTATGATTCCAATTCACATCAAAGACTTTCACGGCTGTTCTGTCGCCATCGACACTTATTCCTGGCTTCACAAAGGTGCCCTTTCTTGCAGCACCGACCTCTGTAAAGGCATACCCACTACTAGGCACATTGAGTATTGTATGCATAGAGTGAATTTGCTGAGACATTATGGTGTTAAGCCTATTCTTGTATTTGATGGAGGGCTTTTACCAATGAAGGGTGATCAAGAGAACAAGCGTGCCCGGTCTAGAAAAGAAAATTTGGAACGTGCGGTTGAACATGAAGCAAATGGAAATTCTACTGCTGCCTATGAGTGCTATCAGAAAGCTGTTGATATTTCACCTCAGATTGCACGAGAACTTATTCAGGTACTGAAGCAAGAGAATGTGCAGTATGTTGTTGCCCCATATGAGGCAGATGCCCAGATGACATTTTTGGCAATTAGCAAACAGGTTGATGCAGTTATAACCGAAGACTCTGATCTTATACCATTTGGTTGTCCAAGGATTATCTTTAAAATGGACAAGTTTGGTCAAGGTGTTCAGTTTCAGTATTCCATGCTACAAAAGAATAAGGAGCTTAATTTTGAAGGGTTCAACAAACAAATGCTTCTTGAAATGTGTATTTTGAGTGGCTGCGACTATCTTCAGTCCTTGCCAGGCATGGGTCTCAAAAAGGCTCATGCAAGCATTAAAAGATTTAAAAGCTATGACAAGGTTCTTAAGCACTTGAAATACAACGGTGTTTCTGTACCTCCCTTTTACGAAGAGTCGTTCAGGAAGGCTATTCTTACTTTCCAATATCAACGAGTTTATGATCCAGTTAGTGAAAATATTGTCCATTTGGCTAATATACCTGAGGATATTGGTGACGAGTTAGACTTTTTAGGCCCACCATTGCCAAAAGATATAGGACAAGGAATAGCAGAAGGAGATCTTGATCCAATTACCAAAATGCCATTTGAGGGAGACAAATTTGCTGCCAGATTGGAAATTGCAGGAACTAGTCAATTCAAAACACTTAATTCTGAAAGGGTGAAGAAAAGGATTGATCTGCCTGTGCAGAAGAATCTCTTGACCAAGTATTTTTGTTTTGCATCCCTTGAAGCAAAAAGGGAATTCAAAGCGCCTCGGACGTCACCTACCACTGCTAATCAAAGTACACTGATTTCCTCTTCTGTCAATTCCCTAGAACATCAGACATTAGAAGCTGCTGCTAGAGAAACAGTGAACTCTGGTGCATCCACTGTTGACACTGAGAATTGTGACAGCAGCCTTCCTCCTAATAGCTATATTGAAAACAGTTTTCCCACCAAAACTTTGGAGCTTATGGAATCACCGAATCATGGAGAGAAGAAAGGAAGTCCTGATCATACAATATTGAGACAGCCGAGGCAGCCAATTCATAAACCTTGTTTGGGGTTGCATAAGGAGCATGAGCTCACAAATGTCGAAGACAAAGCCGAAGAGAAAACCAAGGAGACAAAAAGAAAGGTAATTGTAAGGAGTCGTTATTTTCAGCAGAAACAAGTAGAAAAGAATGCTTGTGACGTGAAACAAGAGCAGCTGTCCTCTTGCATCGTCATTGATGAGAGAAAAAATGGCATATCAGGCGGTGATTTATGTAACAAGCATTTGAAGAATGATGACCTGAAAAAGAAGGTCTACCCTAATGACACTATTCAAAGTGAAAATTTGCAGGCCAGGAAAATGAATCCTACTTCATCTACTCATGATAATGGTTGCTCTGATCACAATGTTGGCGGGCCATTCAAAGAGAATAGTGCTCAAGAAGAAAAATTTGGAACCAACATTTCCCATTTAGGCCATTATTCACAAATATCTGAGAAGTCTTTGGAAAGATTTGCCTCTGTAATATCGGCTTATAAATATACCTCTGGCTCTCGTGTCAGCGGTCTTCGTGCTCCTCTGAAAGATGTTCGCAACACTCATAATAAGAGGCCTGCAGCTGTGGACTTGAGCCAATATGCATACGTGCCAAAACCAACAAAGACTAGAAGAGTAGCTCCTGATGTTCGCAACACTCGCAATATTAGGCCAAAAGCTGTGGACTTGAACCAATTTGCATATGTACCAAAACAAAGACTAGATGAATAG 2154 0.4076 MGIHGLLPLLKSIMIPIHIKDFHGCSVAIDTYSWLHKGALSCSTDLCKGIPTTRHIEYCMHRVNLLRHYGVKPILVFDGGLLPMKGDQENKRARSRKENLERAVEHEANGNSTAAYECYQKAVDISPQIARELIQVLKQENVQYVVAPYEADAQMTFLAISKQVDAVITEDSDLIPFGCPRIIFKMDKFGQGVQFQYSMLQKNKELNFEGFNKQMLLEMCILSGCDYLQSLPGMGLKKAHASIKRFKSYDKVLKHLKYNGVSVPPFYEESFRKAILTFQYQRVYDPVSENIVHLANIPEDIGDELDFLGPPLPKDIGQGIAEGDLDPITKMPFEGDKFAARLEIAGTSQFKTLNSERVKKRIDLPVQKNLLTKYFCFASLEAKREFKAPRTSPTTANQSTLISSSVNSLEHQTLEAAARETVNSGASTVDTENCDSSLPPNSYIENSFPTKTLELMESPNHGEKKGSPDHTILRQPRQPIHKPCLGLHKEHELTNVEDKAEEKTKETKRKVIVRSRYFQQKQVEKNACDVKQEQLSSCIVIDERKNGISGGDLCNKHLKNDDLKKKVYPNDTIQSENLQARKMNPTSSTHDNGCSDHNVGGPFKENSAQEEKFGTNISHLGHYSQISEKSLERFASVISAYKYTSGSRVSGLRAPLKDVRNTHNKRPAAVDLSQYAYVPKPTKTRRVAPDVRNTRNIRPKAVDLNQFAYVPKQRLDE* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2982 717 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 212 334 IPR036279 -
Mtr8g2982 717 Pfam XPG N-terminal domain 1 98 IPR006085 GO:0004518
Mtr8g2982 717 MobiDBLite consensus disorder prediction 420 442 - -
Mtr8g2982 717 Gene3D - 209 281 - -
Mtr8g2982 717 SMART xpgn3 1 99 IPR006085 GO:0004518
Mtr8g2982 717 CDD PIN_EXO1 1 202 IPR044752 GO:0046872
Mtr8g2982 717 Pfam XPG I-region 141 226 IPR006086 GO:0004518
Mtr8g2982 717 SUPERFAMILY PIN domain-like 2 226 IPR029060 -
Mtr8g2982 717 PANTHER EXONUCLEASE 1 1 665 IPR032641 GO:0006281|GO:0035312
Mtr8g2982 717 SMART HhH_4 213 246 IPR008918 GO:0003677|GO:0003824
Mtr8g2982 717 Gene3D - 1 207 - -
Mtr8g2982 717 SMART xpgineu 138 213 IPR006086 GO:0004518
Mtr8g2982 717 Coils Coil 90 110 - -
Mtr8g2982 717 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Mtr8g2982 717 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 73 92 IPR006084 -
Mtr8g2982 717 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 137 154 IPR006084 -
Mtr8g2982 717 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 158 178 IPR006084 -
Mtr8g2982 717 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 216 231 IPR006084 -
Mtr8g2982 717 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 665 IPR006084 -
Mtr8g2982 717 CDD H3TH_EXO1 214 285 IPR037315 GO:0003677|GO:0035312
Mtr8g2982 717 ProSitePatterns XPG protein signature 1. 71 85 IPR019974 GO:0016788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2982 Mtr-Chr8 40463582 40469284 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2982 1 264 Core DNA Replication Machinery Family AT5G26680 26.786 3.94e-18 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2982 K10746 - gmx:100798062 862.448