Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2978 ATGAGTTTTCCAAACGAATCCATGCCAGATTCTCCACAGAGAGCAAAGATTGGAAGAGGGAAGATTGAGATCAAGAGGATTGAGAACACAACGAATCGTCAAGTTACGTTCTGCAAGCGTAGAAATGGCTTGCTTAAGAAGGCATATGAATTATCTGTGCTTTGTGATGCTGAAGTTGCTCTTATAGTCTTCTCGACTCGCGGCCGCCTCTATGAATATGCAAATAACAGTGTCAAAGCATCAATTGAGAGGTACAAGAAAGCATGTTCAGATTCTTCTGGTGCTAAATCAGCTTCTGAGTCTAATGTTCAGTATTACCAGCAAGAAGCTGCCAAACTGCGTGTGCAAATCAGTAACTTGCAGAATCATAACAGGCAAATGATGGGTGAATCTTTGAGCAATATGAATGGTAAGGATCTCAGAAACCTTGAGAGTAAATTAGAAAAAGGAATTAGCAGAATTCGTTCCAAGAAGAATGAAATGCTGTTTGCAGAACTTGAGTACATGCAGAAGAGGGAGGTAGAGTTGCATAATAGTAACCAAGTTCTTAGAGCAAAGATATCAGAAAGTGAGCAGAGGAGCAACCATAATGTTAATGTGTTGCCTGGGGGCACAAGCTTTGAATGCATGCAACCTCAGCAGCAGTTCGACTCTCGTGGCTACTTCCAAGTGAACGAATTACAACCCAATGATCAGTATGCCAGGCAAGATCAGATGTCTCTTCAATTTGTGTAA 735 0.4136 MSFPNESMPDSPQRAKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKASIERYKKACSDSSGAKSASESNVQYYQQEAAKLRVQISNLQNHNRQMMGESLSNMNGKDLRNLESKLEKGISRIRSKKNEMLFAELEYMQKREVELHNSNQVLRAKISESEQRSNHNVNVLPGGTSFECMQPQQQFDSRGYFQVNELQPNDQYARQDQMSLQFV* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2978 244 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Mtr8g2978 244 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Mtr8g2978 244 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Mtr8g2978 244 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Mtr8g2978 244 SUPERFAMILY SRF-like 18 89 IPR036879 GO:0003677|GO:0046983
Mtr8g2978 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Mtr8g2978 244 ProSiteProfiles K-box domain profile. 103 193 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr8g2978 244 Pfam K-box region 99 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr8g2978 244 CDD MADS_MEF2_like 18 92 IPR033896 GO:0000977|GO:0045944
Mtr8g2978 244 Gene3D - 29 100 IPR036879 GO:0003677|GO:0046983
Mtr8g2978 244 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Mtr8g2978 244 ProSitePatterns MADS-box domain signature. 19 73 IPR002100 GO:0003677|GO:0046983
Mtr8g2978 244 Coils Coil 103 130 - -
Mtr8g2978 244 PANTHER MADS BOX PROTEIN 11 238 - -
Mtr8g2978 244 PANTHER AGAMOUSB 11 238 - -
Mtr8g2978 244 Coils Coil 140 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2978 Mtr-Chr8 40428423 40434577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2978 7 244 MADS-box Gene Family AT3G58780 62.963 3.67e-104 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mtr8g2978 K-box 1.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2978 K09264 - gmx:732595 367.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2978 8 40428423 40434577 Mtr2g0566 2 5588584 5596945 PCT