LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr8g2971	ATGCATATACTCTCTATCATCTTGCCAATTTTATCAGCTCATATCCAAAATGATGAAGTTTTTTTGAAGACAAAACAGCCAAACATAGGATTCTGTGTGCTGGTTCTGTCTTTGAGGATGCTATCTAAGATTTTCTTCGCTTTCTCAATCATTGCATTTATTTGTTTCTGTTCCTTGGATTATGCAGAATCTAAACTTCCTCAGCAAGAGATTGATGCTCTTGAAGAAATAACTAGGACAATGGGTTCAAACTATTGGAAATTTGATGGTGATTCATGCGAAATTAAAATGCTTGGTTTAACACAAGAGCCACCTGAAGGATCTCAAAGCAGCATTGGTTGTGATTGCTCTTCTGAAAATGACACATTTTGTCACGTAGTAAGGATATCATTCAAGGAGTACAACCTTCCCGGCACGCTTCCACCTCAACTGGTTAAACTTCCATACCTCAAAGAAGTTGATTTTGCGTTAAACTACCTAAATGGTACAATCCCGAAGGAATGGGCTTCAACCGAACTAACTTCAATCTCGCTATTTGTTAATCGTTTATCAGGGGAGATTCCTAAGGAATTGGGAAATATTACCACTCTAAGATACCTGAACCTTGAAGCAAACCAATTTTCTGGTCTTGTTCCCTCTGAACTTGGAGTTCTATTTAACCTGCAGACTTTGATTTTATCATCCAATCAATTGTCTGGGAACTTACCAGGGACATTTGCTCAGTTACAGAGTTTGATAGATTTTAGGATAAGTGATAATAGTTTCAATGGAAAAATACCTAGCTTCATACAGAATTGGAAACAACTTCAAAGATTAGAAATGCTTGGAAGTGGATTGGAGGGACCTATTCCATCAAATATATCTCTTTTGTCTAATGTATCTCAACTGAAGATTAGCGACATAAATGGTCCAAGTCAGAATTTTCCTATTTTAAGCAACATGACTGGAATGATAAGATTGATTTTGAGGAATTGCAATATCACTGGAGAGGTTCCTAGCTATTTCTGGACAATGAAGCAATTGGGAATGTTGGATCTCAGTTTCAATAACTTGTTTGGGGAAATACCAGCAATTGTACATGTGGGACATTTGAGATTTCTCTTCCTAACTGGCAACAAGCTAAGTGGTAATGTAGCCGACTCAATCTTGATGTCTGGAAGCAATGTTGATCTTTCTTACAACAACTTTACATATCAAGGACCTGGGAAATCTGCATGTGGAGACTACCTGAACTTAAACCTAAACTTGTTCCGGAGCTCCTTAGGGACCAATGCATTACAGGGGATGCTTCCATGTTCAAATAATTTCAAATGTCCTAGATATTCAAGTTGTTTGCATGTTAATTGTGGTGGAAAGGATATACAGGTGAAGGAAAATGGTGAAAATATCCTCTATATTGGAGATGGAGATGTGGTCGGTGGTGCTGCTAAATATTACGATGATTCTGAAAATCACTGGGGGTTTAGTAGTACTGGAGACTTCATGGATGATGGTGATTATCAAAATACACGTTACTCCAGATCTCTGTCATCTTCAAATATGCCGGAATTATATACAACGGCTCGTGCCTCTCCCATTTCACTTACTTATTTTCACTATTGCTTGGAAAATGGGAAATATACTGTGCGCCTCCACTTTGCAGAAATACAATTTACAAATGATAGGACATATAAAAGCCTTGGGAAGCGCTTATTTGATATCTATATTCAGGGAAGATTGGTTCAGAAGGATTATAATATTGAAAATGAATCACACCTTGCTCAAAAACCGCGTATATTATCAGTATATAATGTGACTGTTACAGACGGTATTCTGGAGATTCGATTATACTGGGCTGGCAAGGGGACTACAAGGATTCCTGTTAGTGGAGTTTATGGTCCCCTTATATCGGCTTTCTCTATTGTTTCTGATTCTAAACATTGTTCAGATCAAAAAAATGGAAGGCATAAAATTGTTGTTGGAGTAGGATTTGGAGTTACAGCTCTGTGCTTAGTCCTTATTGTGGTAGGCATTTTGTGGAGGAAAGGCTACACCAAAGGAATAATTAGAAGACAAAAAGTTATTAAAGGGCAAGATTTTCAGATGAGAACATTTACTTTAAAACAAATTAGAGCCGCCACGGATGGATTCAGTCCTGCTAATAAGGTTGGGGAAGGTGGTTTTGGTTCTGTCTACAAGGGTCAACTATATGATGGTACATGGGTAGCAGTCAAACAACTCTCCTCGAAGTCCCGGCAGGGAAACCGTGAATTTTTAAACGAGATAGGCATGATATCTTGTTTACAACATCCTAATCTTGTGAAACTTCATGGATGCTGCATTGAAGGGGATCAATTAATATTGGTGTATGAGTACATGGAAAATAATAGCCTGGCCCGTGCTTTATTCCAAAATCAGCTTAAACTTGACTGGTCATCAAGGCTTAGGATCTGCATTGGCATAGCAAAAGGTCTTTCATTTCTTCACGAAGAATCGAGACTCAAGATTGTTCATCGAGATATCAAAGCTAATAACGTGTTACTGGATGGGAATTTAAATCCTAAAATATCTGATTTTGGGTTGGCGAGGCTTGATGAAGAGGAAAAGACCCATATCACCACACGAGTGGCGGGAACAATAGGATATATGGCTCCGGAATATGCTTTATGGGGTTACTTGAGTTACAAGGTTGATGTTTATAGTTTTGGAGTCGTGGTCTTGGAAACTGTTAGTGGAAAGAGTAACAATAATTACATGCCAAGTGATAATTGTGTTTGCCTTTTAGATAAGGCATTATATCTGGATCGGACTGAAAACTTTATGCAACTGGTTGATGAGAGATTAGGGTCAGAGGTAAACCCAACTGAAACAAAAAATGTAGTGAGAGTAGCTCTCTTATGTACGAATCCATCACCATCACTTAGGCCTACTATGTCTGAGGTTGTAAACATGCTTGAAGGAAGAATGAGCATTCCAGATGTTATCCCAGAAGGTAATACTTTCTGTGAAGATTTAAGGTTTAAATCCATGAGGGACATCCATCAAAACAAGGAAGGTCATAGTGTAAGCACAAGCCAAACAGACGGCTCAACAGGAGTGCGTACATATAGCACTCCCTCAACATTTGGCAATGACATTCATGAGATATCCTCTGAACCATAA	3141	0.3846	MHILSIILPILSAHIQNDEVFLKTKQPNIGFCVLVLSLRMLSKIFFAFSIIAFICFCSLDYAESKLPQQEIDALEEITRTMGSNYWKFDGDSCEIKMLGLTQEPPEGSQSSIGCDCSSENDTFCHVVRISFKEYNLPGTLPPQLVKLPYLKEVDFALNYLNGTIPKEWASTELTSISLFVNRLSGEIPKELGNITTLRYLNLEANQFSGLVPSELGVLFNLQTLILSSNQLSGNLPGTFAQLQSLIDFRISDNSFNGKIPSFIQNWKQLQRLEMLGSGLEGPIPSNISLLSNVSQLKISDINGPSQNFPILSNMTGMIRLILRNCNITGEVPSYFWTMKQLGMLDLSFNNLFGEIPAIVHVGHLRFLFLTGNKLSGNVADSILMSGSNVDLSYNNFTYQGPGKSACGDYLNLNLNLFRSSLGTNALQGMLPCSNNFKCPRYSSCLHVNCGGKDIQVKENGENILYIGDGDVVGGAAKYYDDSENHWGFSSTGDFMDDGDYQNTRYSRSLSSSNMPELYTTARASPISLTYFHYCLENGKYTVRLHFAEIQFTNDRTYKSLGKRLFDIYIQGRLVQKDYNIENESHLAQKPRILSVYNVTVTDGILEIRLYWAGKGTTRIPVSGVYGPLISAFSIVSDSKHCSDQKNGRHKIVVGVGFGVTALCLVLIVVGILWRKGYTKGIIRRQKVIKGQDFQMRTFTLKQIRAATDGFSPANKVGEGGFGSVYKGQLYDGTWVAVKQLSSKSRQGNREFLNEIGMISCLQHPNLVKLHGCCIEGDQLILVYEYMENNSLARALFQNQLKLDWSSRLRICIGIAKGLSFLHEESRLKIVHRDIKANNVLLDGNLNPKISDFGLARLDEEEKTHITTRVAGTIGYMAPEYALWGYLSYKVDVYSFGVVVLETVSGKSNNNYMPSDNCVCLLDKALYLDRTENFMQLVDERLGSEVNPTETKNVVRVALLCTNPSPSLRPTMSEVVNMLEGRMSIPDVIPEGNTFCEDLRFKSMRDIHQNKEGHSVSTSQTDGSTGVRTYSTPSTFGNDIHEISSEP*	1047

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr8g2971	1046	SUPERFAMILY	Protein kinase-like (PK-like)	692	979	IPR011009	-
	Mtr8g2971	1046	Gene3D	-	442	639	-	-
	Mtr8g2971	1046	MobiDBLite	consensus disorder prediction	1012	1046	-	-
	Mtr8g2971	1046	Pfam	Protein tyrosine and serine/threonine kinase	714	978	IPR001245	GO:0004672\|GO:0006468
	Mtr8g2971	1046	ProSitePatterns	Protein kinases ATP-binding region signature.	716	738	IPR017441	GO:0005524
	Mtr8g2971	1046	Gene3D	Phosphorylase Kinase; domain 1	677	785	-	-
	Mtr8g2971	1046	CDD	STKc_IRAK	716	980	-	-
	Mtr8g2971	1046	Gene3D	Ribonuclease Inhibitor	237	300	IPR032675	-
	Mtr8g2971	1046	ProSiteProfiles	Protein kinase domain profile.	710	982	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mtr8g2971	1046	SMART	serkin_6	710	978	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mtr8g2971	1046	Gene3D	Ribonuclease Inhibitor	98	236	IPR032675	-
	Mtr8g2971	1046	Pfam	Malectin domain	444	632	IPR021720	-
	Mtr8g2971	1046	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	105	1023	-	-
	Mtr8g2971	1046	PANTHER	RECEPTOR-LIKE KINASE IN FLOWERS 1-RELATED	105	1023	-	-
	Mtr8g2971	1046	MobiDBLite	consensus disorder prediction	1007	1046	-	-
	Mtr8g2971	1046	Gene3D	Transferase(Phosphotransferase) domain 1	786	986	-	-
	Mtr8g2971	1046	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	829	841	IPR008271	GO:0004672\|GO:0006468
	Mtr8g2971	1046	Gene3D	Ribonuclease Inhibitor	302	408	IPR032675	-
	Mtr8g2971	1046	SUPERFAMILY	L domain-like	120	377	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr8g2971	Mtr-Chr8	40356369	40367482	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr8g2971	46	873	Receptor kinase-like Gene Family	AT1G29750	59.928	0.0	1025

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Mtr8g2971		PK_Tyr_Ser-Thr	3.1e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr8g2971	-		-	vra:106779815	1415.21