Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2969 ATGGCAGAAAATTCAGCTAGCAATGCAACCAATGAGATTGTTTTAAACGTAAACAAGGATGTCTCTAACAAAAGTGAAGACTCAACCTCTCATGCCACCGCTTCTTTCTTGCAGAAGTTGGTAGCTGAGGTGATAGGCACATATTTCTTGATATTTGCCGGTTGTGCTTCGGTGTTGGTGAACAAGAACAATGAAAATGTTGTAACACTTCCTGGAATTTCAATTGTTTGGGGACTTGCTGTGATGGTGCTGGTTTACTCTCTTGGTCACATCTCTGGTGCTCATTTCAATCCTGCAGTTACCATTGCTTTTGCCAGCACCAAAAGATTTCCCTTGAAACAGGTACCAGCTTATGTAGCAGCTCAAGTCTTTGGATCCACACTTGCAAGTGGAACTCTTAGACTAATATTTACCGGCAAACATAATCAATTTGTTGGAACACTTCCAGCTGGGTCTGACCTTCAAGCTTTTGTGATTGAATTCATCATCACTTTTTACCTTATGTTTATCATATCTGGAGTTGCCACTGATAATAGAGCGATTGGTGAGTTGGCTGGGATTGCAGTTGGATCTACTGTACTTTTGAATGTGATGTTTGCAGGACCAATCACAGGAGCATCAATGAATCCAGCAAGAAGTATAGGACCTGCTCTTCTACACAGTGAATACAGAGGAATATGGATATACTTGGTGTCTCCTATTCTTGGAGCTGTGGCTGGTGCATGGGTTTATAACGTCATTCGGTACACGGATAAGCCGGTTCGCGAGATCACCAAGAGCTCATCTTTCCTAAAAGCAGCAAAACCATAG 810 0.4222 MAENSASNATNEIVLNVNKDVSNKSEDSTSHATASFLQKLVAEVIGTYFLIFAGCASVLVNKNNENVVTLPGISIVWGLAVMVLVYSLGHISGAHFNPAVTIAFASTKRFPLKQVPAYVAAQVFGSTLASGTLRLIFTGKHNQFVGTLPAGSDLQAFVIEFIITFYLMFIISGVATDNRAIGELAGIAVGSTVLLNVMFAGPITGASMNPARSIGPALLHSEYRGIWIYLVSPILGAVAGAWVYNVIRYTDKPVREITKSSSFLKAAKP* 270
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2969 269 TIGRFAM MIP: MIP family channel proteins 42 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr8g2969 269 CDD MIP 38 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr8g2969 269 PANTHER AQUAPORIN NIP2-1 1 267 IPR034294 -
Mtr8g2969 269 ProSitePatterns MIP family signature. 95 103 IPR022357 -
Mtr8g2969 269 Pfam Major intrinsic protein 33 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr8g2969 269 Gene3D Glycerol uptake facilitator protein. 2 260 IPR023271 -
Mtr8g2969 269 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr8g2969 269 PRINTS Major intrinsic protein family signature 77 101 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr8g2969 269 PRINTS Major intrinsic protein family signature 114 133 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr8g2969 269 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr8g2969 269 PRINTS Major intrinsic protein family signature 190 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr8g2969 269 PRINTS Major intrinsic protein family signature 227 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr8g2969 269 SUPERFAMILY Aquaporin-like 33 258 IPR023271 -
Mtr8g2969 269 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 1 267 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Mtr8g2969 Mtr-Chr8 40346208 40348741 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2969 18 269 Major Intrinsic Protein MIP AT5G37810 58.661 1.24e-106 308
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2969 K09874 - gmx:100798526 441.039
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2969 8 40346208 40348741 Mtr2g0549 2 5449175 5451904 PCT