Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2968 ATGGCTAATGATAATTCAGCAAGAATTGAAACCCATGAGGTTGTTTTAGATACAAACAAGGATTCCTCAGATACATGTAAAGGCTCTGGCTCCTTTGTCTCTGTCCCTTTCTTGCAAAAGTTAATAGCAGAAATGGTGGGCACATATTTCTTAATATTTGCAGGATGTGCATCAATAGTAGTGAACAAGGACAACGACAACGTAGTAACACTTCCAGGGATTGCAATTGTTTGGGGACTAACTTTGTTGGTATTGATTTACTCTCTTGGTCATATCTCTGGTGCTCATTTCAATCCTGCTGTTACTATTGCTTTTGCTACCACAAGGAGGTTTCCATTGTTACAGGTACCAGCTTATATATCAGCTCAGCTCTTGGGAGCAACACTTGCTAGTGGAACTCTAAAACTAATATTCAGTGGCGCACATGACCACTTTTCAGGAACACTTCCTTCTGGGTCTAACCTTCAAGCTTTTGTTCTTGAATTCATAACCACATTTTACCTTATGTTTACCATTTCTGGAGTTGCCACCGATACTAGAGCGATTGGTGAGTTGGCTGGAATTGCAATTGGGTCTACATTATTGCTTAACGTGATGATTGCCGGGCCGGTAACAGGAGCATCGATGAACCCTGTTAGAACTCTAGGACCAGCTTTTGTACACAATGAGTATAGAGGAATATGGATATATTTGCTGTCGCCGATTTTGGGGGCCATCGCCGGAGCATGGGTCTACAACACTGTTAGGTACACTAACAAGCCATTGCGTGAGATCACCCAGAGTGCATCCTTCCTCAAAGAAGCTGGGCGTGGTGGACACCAAATAGTTTAA 831 0.426 MANDNSARIETHEVVLDTNKDSSDTCKGSGSFVSVPFLQKLIAEMVGTYFLIFAGCASIVVNKDNDNVVTLPGIAIVWGLTLLVLIYSLGHISGAHFNPAVTIAFATTRRFPLLQVPAYISAQLLGATLASGTLKLIFSGAHDHFSGTLPSGSNLQAFVLEFITTFYLMFTISGVATDTRAIGELAGIAIGSTLLLNVMIAGPVTGASMNPVRTLGPAFVHNEYRGIWIYLLSPILGAIAGAWVYNTVRYTNKPLREITQSASFLKEAGRGGHQIV* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2968 276 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr8g2968 276 PRINTS Major intrinsic protein family signature 78 102 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr8g2968 276 PRINTS Major intrinsic protein family signature 115 134 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr8g2968 276 PRINTS Major intrinsic protein family signature 160 178 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr8g2968 276 PRINTS Major intrinsic protein family signature 191 213 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr8g2968 276 PRINTS Major intrinsic protein family signature 228 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr8g2968 276 PANTHER AQUAPORIN NIP2-1 3 270 IPR034294 -
Mtr8g2968 276 CDD MIP 39 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr8g2968 276 TIGRFAM MIP: MIP family channel proteins 43 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr8g2968 276 Pfam Major intrinsic protein 33 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr8g2968 276 PANTHER NODULIN-26 3 270 - -
Mtr8g2968 276 SUPERFAMILY Aquaporin-like 34 259 IPR023271 -
Mtr8g2968 276 ProSitePatterns MIP family signature. 96 104 IPR022357 -
Mtr8g2968 276 Gene3D Glycerol uptake facilitator protein. 2 261 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2968 Mtr-Chr8 40341097 40343356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2968 39 270 Major Intrinsic Protein MIP AT5G37820 59.914 2.58e-100 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2968 K09874 - gmx:100813448 427.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2968 8 40341097 40343356 Mtr2g0547 2 5439179 5441698 PCT