Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2962 ATGGATGAAGCAGGAAGTTCGAGTTCTTTGCCTCCTTTTCTGGCAAAGACTTATGAGATGGTGGATGATCGATCCTCGGATCCTATTGTTTCGTGGAGTGCATCGAACAAAAGTTTCGTTGTGTGGAATCCTCCGGAATTCGCAAGGGTTTTGCTTCCTAGATTCTTTAAGCACAATAACTTCTCCAGTTTTATCAGGCAGCTGAATACATATGGATTTAGGAAAGTTGATCCGGAACAATGGGAATTTGCCAATGATGATTTTTTAAGGGGGCAACCACATCTTATGAAGAATATTCATAGACGGAAGCCGGTTCATAGTCATTCTCTGCATAATCTTCAAGCACAAGCCCCTCTAACGGAGTCTGAAAGGCAGAGTATGGTTGATGAAATAGAGAAGCTGAAACAGGATAGAGAACAACTCCTCATGGAGACGAACAGATACCAGCATGATTGGGAAACGTATGAGATTCAAATGCATTGTTCGAAAGATCAGTTGGAAAAATTGGAACATAAGCAACAAAAGATGTTGTCCTCTGTTTCTGAAGCACTGCAGAAACCTATGATTGCTGTAAATCTCTTGCCACTGGCAGAAGCCATGGAGAGAAAACGAAGGTTGCCGGCGAGAAGTGGTTGCTTTAATAATGAAGCTAGTGTTGAAGATGCTATGGAGACTTCTGTAGCTTTGCCCAGGGAAAATGCAGAGGATAACTCTACTTTGACGTTAAACACCGAGAGATTGGATCAACTTGAGGCATCCGTGGCATTTTGGGAGACTCTTGCACATGAAGTTGGCGGCAATTTCGTTCACACTCATTCAAACATGGATTTAGATGAATCTACATGCTGTGCTGATAGTTTGTCCATATCTTCTCAGCAACTAGACGGTGAAGTTCGACCTAAGTCACCTGAAATTGACATGAACGTTGAACCAGCTTCTGCTGCTCTTGAGGCTGTTGCACTAAAAGAACAACCTGCGAGAATCACCACTGCAGCAACTGGGGTTAATGATGTATTCTGGGAGCAGTTCTTGACTGAGGATCCTGGTGCATCGGAAGCACAGGAAGTGCAATCAGAAAGAAAAGATAATAGTAGCAGAAAAAATGAAGGAAAACCTAGTGATCATGGTAGATTTTGGTGGAACATGCGGAAATCAAACAATCATCCTGAACAGATGGGGCATGTTAGTCAAGTAGAGAAAATTTAG 1206 0.4254 MDEAGSSSSLPPFLAKTYEMVDDRSSDPIVSWSASNKSFVVWNPPEFARVLLPRFFKHNNFSSFIRQLNTYGFRKVDPEQWEFANDDFLRGQPHLMKNIHRRKPVHSHSLHNLQAQAPLTESERQSMVDEIEKLKQDREQLLMETNRYQHDWETYEIQMHCSKDQLEKLEHKQQKMLSSVSEALQKPMIAVNLLPLAEAMERKRRLPARSGCFNNEASVEDAMETSVALPRENAEDNSTLTLNTERLDQLEASVAFWETLAHEVGGNFVHTHSNMDLDESTCCADSLSISSQQLDGEVRPKSPEIDMNVEPASAALEAVALKEQPARITTAATGVNDVFWEQFLTEDPGASEAQEVQSERKDNSSRKNEGKPSDHGRFWWNMRKSNNHPEQMGHVSQVEKI* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2962 401 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-4C 2 382 - -
Mtr8g2962 401 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 382 IPR027725 -
Mtr8g2962 401 ProSitePatterns HSF-type DNA-binding domain signature. 52 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr8g2962 401 MobiDBLite consensus disorder prediction 347 401 - -
Mtr8g2962 401 SUPERFAMILY "Winged helix" DNA-binding domain 8 102 IPR036390 -
Mtr8g2962 401 Coils Coil 166 186 - -
Mtr8g2962 401 Gene3D - 5 103 IPR036388 -
Mtr8g2962 401 SMART hsfneu3 9 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr8g2962 401 Pfam HSF-type DNA-binding 13 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr8g2962 401 MobiDBLite consensus disorder prediction 353 378 - -
Mtr8g2962 401 Coils Coil 124 151 - -
Mtr8g2962 401 PRINTS Heat shock factor (HSF) domain signature 13 36 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr8g2962 401 PRINTS Heat shock factor (HSF) domain signature 51 63 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr8g2962 401 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2962 Mtr-Chr8 40253022 40255170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2962 1 400 HSF AT4G18880 50.852 2.26e-115 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Mtr8g2962 HSF_DNA-bind 6.3e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2962 K09419 - gmx:100798004 615.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2962 8 40253022 40255170 Mtr2g0537 2 5343279 5345577 PCT