LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr8g2962	ATGGATGAAGCAGGAAGTTCGAGTTCTTTGCCTCCTTTTCTGGCAAAGACTTATGAGATGGTGGATGATCGATCCTCGGATCCTATTGTTTCGTGGAGTGCATCGAACAAAAGTTTCGTTGTGTGGAATCCTCCGGAATTCGCAAGGGTTTTGCTTCCTAGATTCTTTAAGCACAATAACTTCTCCAGTTTTATCAGGCAGCTGAATACATATGGATTTAGGAAAGTTGATCCGGAACAATGGGAATTTGCCAATGATGATTTTTTAAGGGGGCAACCACATCTTATGAAGAATATTCATAGACGGAAGCCGGTTCATAGTCATTCTCTGCATAATCTTCAAGCACAAGCCCCTCTAACGGAGTCTGAAAGGCAGAGTATGGTTGATGAAATAGAGAAGCTGAAACAGGATAGAGAACAACTCCTCATGGAGACGAACAGATACCAGCATGATTGGGAAACGTATGAGATTCAAATGCATTGTTCGAAAGATCAGTTGGAAAAATTGGAACATAAGCAACAAAAGATGTTGTCCTCTGTTTCTGAAGCACTGCAGAAACCTATGATTGCTGTAAATCTCTTGCCACTGGCAGAAGCCATGGAGAGAAAACGAAGGTTGCCGGCGAGAAGTGGTTGCTTTAATAATGAAGCTAGTGTTGAAGATGCTATGGAGACTTCTGTAGCTTTGCCCAGGGAAAATGCAGAGGATAACTCTACTTTGACGTTAAACACCGAGAGATTGGATCAACTTGAGGCATCCGTGGCATTTTGGGAGACTCTTGCACATGAAGTTGGCGGCAATTTCGTTCACACTCATTCAAACATGGATTTAGATGAATCTACATGCTGTGCTGATAGTTTGTCCATATCTTCTCAGCAACTAGACGGTGAAGTTCGACCTAAGTCACCTGAAATTGACATGAACGTTGAACCAGCTTCTGCTGCTCTTGAGGCTGTTGCACTAAAAGAACAACCTGCGAGAATCACCACTGCAGCAACTGGGGTTAATGATGTATTCTGGGAGCAGTTCTTGACTGAGGATCCTGGTGCATCGGAAGCACAGGAAGTGCAATCAGAAAGAAAAGATAATAGTAGCAGAAAAAATGAAGGAAAACCTAGTGATCATGGTAGATTTTGGTGGAACATGCGGAAATCAAACAATCATCCTGAACAGATGGGGCATGTTAGTCAAGTAGAGAAAATTTAG	1206	0.4254	MDEAGSSSSLPPFLAKTYEMVDDRSSDPIVSWSASNKSFVVWNPPEFARVLLPRFFKHNNFSSFIRQLNTYGFRKVDPEQWEFANDDFLRGQPHLMKNIHRRKPVHSHSLHNLQAQAPLTESERQSMVDEIEKLKQDREQLLMETNRYQHDWETYEIQMHCSKDQLEKLEHKQQKMLSSVSEALQKPMIAVNLLPLAEAMERKRRLPARSGCFNNEASVEDAMETSVALPRENAEDNSTLTLNTERLDQLEASVAFWETLAHEVGGNFVHTHSNMDLDESTCCADSLSISSQQLDGEVRPKSPEIDMNVEPASAALEAVALKEQPARITTAATGVNDVFWEQFLTEDPGASEAQEVQSERKDNSSRKNEGKPSDHGRFWWNMRKSNNHPEQMGHVSQVEKI*	402

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Mtr8g2962	401	PANTHER	HEAT STRESS TRANSCRIPTION FACTOR A-4C	2	382	-	-
Mtr8g2962	401	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	2	382	IPR027725	-
Mtr8g2962	401	ProSitePatterns	HSF-type DNA-binding domain signature.	52	76	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
Mtr8g2962	401	MobiDBLite	consensus disorder prediction	347	401	-	-
Mtr8g2962	401	SUPERFAMILY	"Winged helix" DNA-binding domain	8	102	IPR036390	-
Mtr8g2962	401	Coils	Coil	166	186	-	-
Mtr8g2962	401	Gene3D	-	5	103	IPR036388	-
Mtr8g2962	401	SMART	hsfneu3	9	102	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
Mtr8g2962	401	Pfam	HSF-type DNA-binding	13	102	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
Mtr8g2962	401	MobiDBLite	consensus disorder prediction	353	378	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr8g2962	Mtr-Chr8	40253022	40255170	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr8g2962	1	400	HSF	AT4G18880	50.852	2.26e-115	340

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Mtr8g2962		HSF_DNA-bind	6.3e-31	CL0123

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr8g2962	K09419		-	gmx:100798004	615.535

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mtr8g2962	8	40253022	40255170	Mtr2g0537	2	5343279	5345577	PCT

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