Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2936 ATGGATCAGGGAACAAGTAAAGGTAGTGGTGAAATGTTGGATCATGTTGATAAAGGGGTTGATAAGAATTTGATTAATTTGGTTGAAGGCGTTGCAACTGATGCAGGAGCTGGACATAGTTTGGGTGTCAGGGTTAGTGTATGCGGTGAAGATCGGAATTCAGAAGAGACGTGCAATGATCTTGTATTGAATGAGGAGTTAGAGGAGAAAGCTTTAGAAGTTAGGAGTCAGAACATTGGTGGTGATCCTGAAAAAATTGACAATGAATTGCATAGTGTTGATCAAGGGACTAGTTATAATTCGCTTAATCGGGAAACACTAGAGACCTGTGTTGTAATAGATTCTTCTGCTCAAGTTGAACGTGTCACTGTCAATGGAGATAATAGAAAATTGGAAGCTAAAACTAATGAATCAGGGCTGCGCAAGTTATCGATAAAAGCACCAAAAGGGGTGTCTGAGACCGATAAAAATTCATGTGTGATTGATATGAACTGTGGCACATGTGAAGGTTTTGGTGAAAATTTGGATGACGAAATGATTTGTAGGATTTGCCATCTGGCCTCTGGGCAACCGTTAGAAGCAACTGCTGTTGGCACTCCAAATATTGCTGATAAAAGTACAGGTTTGATTATGCTTGGTTGTGCATGTAAAGATGAGCTAGGAATCGCACACAGCCATTGCGCTGAGGCATGGTTCAAGATTAAAGGAAACAGGTTGTGCGAAATATGTGGCGAGACTGCCAAAAACGTGTCTGATGTTACTGCTAATGCATTCATGGAAGAATGGTGTGAAAGTGGATTCATCAACAATGATAGTACATCACCCCGTAGGTTGGTTGGATGCTGGCGCGGGCAGCCATTCTGTAACTTCTTGATGGTGTGTCTGGTAATAGCTTTTGTTCTGCCATGGTTCTTTCGTGTGAAGATGTTCTAG 933 0.4169 MDQGTSKGSGEMLDHVDKGVDKNLINLVEGVATDAGAGHSLGVRVSVCGEDRNSEETCNDLVLNEELEEKALEVRSQNIGGDPEKIDNELHSVDQGTSYNSLNRETLETCVVIDSSAQVERVTVNGDNRKLEAKTNESGLRKLSIKAPKGVSETDKNSCVIDMNCGTCEGFGENLDDEMICRICHLASGQPLEATAVGTPNIADKSTGLIMLGCACKDELGIAHSHCAEAWFKIKGNRLCEICGETAKNVSDVTANAFMEEWCESGFINNDSTSPRRLVGCWRGQPFCNFLMVCLVIAFVLPWFFRVKMF* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2936 310 Pfam RING-variant domain 201 243 IPR011016 GO:0008270
Mtr8g2936 310 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 310 - -
Mtr8g2936 310 PANTHER ZINC FINGER, RING-CH-TYPE 1 310 - -
Mtr8g2936 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 174 248 IPR013083 -
Mtr8g2936 310 ProSiteProfiles Zinc finger RING-CH-type profile. 173 250 IPR011016 GO:0008270
Mtr8g2936 310 SUPERFAMILY RING/U-box 177 246 - -
Mtr8g2936 310 SMART ringv_2 180 244 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2936 Mtr-Chr8 39985853 39989018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2936 161 309 C3H Transcription Factor Family AT5G05830 38.462 2.89e-26 101
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2936 8 39985853 39989018 Mtr2g0512 2 5084707 5087621 PCT