Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2924 ATGAATATGGATAACCTAAGAAAGAAAAACACAGGGCGTAGAAAGATTGAGATCAAAAAGCTTGAAAAAGAAACCAACAAGCAAGTCACTTTCTCAAAAAGAAGACAAGGTTTATTCCGAAAAGCGAGTGAACTTTGCACTTTATGTGATGTTCATGCAGCCATCATCGTGTTTTCTCCTGCTGGCAAACTACACTGTTTCGGTGAACCAAACACCGACCAAATCCTTAATAGCTACATCAATGGAACCATTGAGTTTGATGTTTCAAACTCAACGGGAAATTCTTCGACCTACAAAGAGTACAATAAACAATATGAGGAGGCACTAAAGGTGTTGGAAATGGAAAAACAGAAACTTGCTGATGTTGAAAATTTGACTAAGATTTGGAATATGGGTAACTGGTGGAATGAATCTATTGATGAGATGAATAGTGATCAGCTTGAAGAATTTATGGAGTCCATTTCTGAGTTAAAGAGGAAGCTACTTGAAAAGGCTGATGAACATGCGAATACCATGATGTTTTCTATGTTGTAG 534 0.3708 MNMDNLRKKNTGRRKIEIKKLEKETNKQVTFSKRRQGLFRKASELCTLCDVHAAIIVFSPAGKLHCFGEPNTDQILNSYINGTIEFDVSNSTGNSSTYKEYNKQYEEALKVLEMEKQKLADVENLTKIWNMGNWWNESIDEMNSDQLEEFMESISELKRKLLEKADEHANTMMFSML* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2924 177 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Mtr8g2924 177 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Mtr8g2924 177 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Mtr8g2924 177 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Mtr8g2924 177 CDD MADS_MEF2_like 12 83 IPR033896 GO:0000977|GO:0045944
Mtr8g2924 177 Gene3D - 23 172 IPR036879 GO:0003677|GO:0046983
Mtr8g2924 177 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Mtr8g2924 177 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 8 176 - -
Mtr8g2924 177 Coils Coil 98 125 - -
Mtr8g2924 177 Coils Coil 147 167 - -
Mtr8g2924 177 SUPERFAMILY SRF-like 12 82 IPR036879 GO:0003677|GO:0046983
Mtr8g2924 177 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 21 67 IPR002100 GO:0003677|GO:0046983
Mtr8g2924 177 PANTHER MADS BOX PROTEIN 8 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2924 Mtr-Chr8 39860958 39861717 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2924 8 165 Type I MADS-box Gene Family AT5G60440 40.606 3.74e-35 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr8g2924 SRF-TF 1.8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2924 - - cam:101502875 225.328