Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2912 ATGGATTATCAAAACCAAAAGAGCAACGAGAACAAACACGGGGAGAAACTTATGATGAAGAATAGGTCAAAGTTTGTTGGAGTGAGACAAAGAGCTTCAGGAAAATGGGCAGCAGAGATAAAAGACACATCAAAGAACATTAGGATGTGGCTTGGTACCTATAAAACTGCTGAGGAAGCTGCTCGAGCTTACGATGAAGCTGCTTTTCTCCTTAGAGGTACAAATACTCGTACCAATTTCTCTACTACTCATTCCATCCCTACCAATTCTCCAATATCTCTCAAACTGAAAAACCTACTTCATCGTAAATCCATCTCAAATCTAAGTCAAAGTAAAAATCAGTGCACTTTGATGAGTTCCTCTTTACAAGGTGCTCCTATTGATAATAGCATCATGGTAATGGAAAATGAAAACAAATCTTCATGTAGTAGTGAAGAGTCAAAGTCTTTGTTTTGGGTTCAGAACCAATTAGTATCTGAATATAATCCTTATGGGGTGGATATGAATATGATGAACTGCTCAATTGGTATTACACCAAATACATTACAGATTGATTATTCTTGGCCATTACCTCAACAAAGGATTAACGAGTTACCAACACTAAATGATAGTGTGAATGTATATGGTATGAATGAGTGCTATGTGGAAGGTACATATGAATCTAAGTATGAATATGATGTCAATTACCCTCTTTCTCACTTGTTCTGTTTTACTTGA 717 0.3626 MDYQNQKSNENKHGEKLMMKNRSKFVGVRQRASGKWAAEIKDTSKNIRMWLGTYKTAEEAARAYDEAAFLLRGTNTRTNFSTTHSIPTNSPISLKLKNLLHRKSISNLSQSKNQCTLMSSSLQGAPIDNSIMVMENENKSSCSSEESKSLFWVQNQLVSEYNPYGVDMNMMNCSIGITPNTLQIDYSWPLPQQRINELPTLNDSVNVYGMNECYVEGTYESKYEYDVNYPLSHLFCFT* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2912 238 SUPERFAMILY DNA-binding domain 23 82 IPR016177 GO:0003677
Mtr8g2912 238 Gene3D AP2/ERF domain 23 83 IPR036955 GO:0003700|GO:0006355
Mtr8g2912 238 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Mtr8g2912 238 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Mtr8g2912 238 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Mtr8g2912 238 Pfam AP2 domain 23 73 IPR001471 GO:0003700|GO:0006355
Mtr8g2912 238 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-11 133 223 - -
Mtr8g2912 238 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-11 13 115 - -
Mtr8g2912 238 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Mtr8g2912 238 CDD AP2 23 80 IPR001471 GO:0003700|GO:0006355
Mtr8g2912 238 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 13 115 - -
Mtr8g2912 238 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 133 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2912 Mtr-Chr8 39744182 39745099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2912 6 101 AP2-EREBP Transcription Factor Family AT5G19790 65.625 1.94e-36 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr8g2912 AP2 7.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2912 K09286 - gmx:100803832 279.641