Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2882 ATGGATGATGTTGTTCTAAACAATCTCTTCGTGTTCAGCATCTTCCGTGATATGTCTAACGGCATATTAGACAAACTTCTGTCTGGCATTAAAGAATGTGCTAGAAATATGGTTGCACTCAACATCGAAGAATGTGGAACGTTGGAGATGAATGTGCTGCTCCGTAGAGTTACCACACTCGAGGTTGAAGAAGATGGATTAGATCAATACTATCAATGTTCTATTTCTCAACAAAATGTTGGTTTGTCATTGAAATCGGTTGATGAAACTATTTCAAATTCCAACGATAAATGTTCAATTTGTTTGGAGGAGTTGCACAACGAATCGCAGTCAAAACTCTTTCATACAAAATGCTCTCATGTTTTTCATAAAGAGTGTATTGCCCAGTTGATCTATGGATGCATCAATCGTTCGACTCCGTATTCTTGTCCAATGTGTCGACAAGAGATAATGTGA 456 0.3772 MDDVVLNNLFVFSIFRDMSNGILDKLLSGIKECARNMVALNIEECGTLEMNVLLRRVTTLEVEEDGLDQYYQCSISQQNVGLSLKSVDETISNSNDKCSICLEELHNESQSKLFHTKCSHVFHKECIAQLIYGCINRSTPYSCPMCRQEIM* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2882 151 ProSiteProfiles Zinc finger RING-type profile. 98 147 IPR001841 -
Mtr8g2882 151 SUPERFAMILY RING/U-box 86 150 - -
Mtr8g2882 151 Pfam Ring finger domain 96 147 IPR001841 -
Mtr8g2882 151 CDD RING-H2 98 147 - -
Mtr8g2882 151 PANTHER RING ZINC FINGER PROTEIN-RELATED 42 150 - -
Mtr8g2882 151 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 150 IPR013083 -
Mtr8g2882 151 SMART ring_2 98 146 IPR001841 -
Mtr8g2882 151 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 42 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2882 Mtr-Chr8 39507146 39507601 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2882 60 150 C3H Transcription Factor Family AT2G42360 24.176 8.99e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2882 - K15711 mtr:MTR_8g085520 256.529