Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2876 ATGGCAGGGGTTTCGCTCCAGTGCGGTGATTGCGGTACTCTCTTGAAATCGGTTGAAGAAGCTCAAGAACATGCTGAACTCACCTCACACTCCAATTTCTCTGAATCCACCGAACCCGTTCTCAATCTCGTCTGCTCCACTTGCTCCAAACCCTGCCGATCCAAAACCGAGAGTGATTTGCACACCAAGAGAACCGGGCATACTGAATTTTCTGATAAGACTGCCGAAGCGGCGAAGCCCATAAGTTTAGAGGTTCCTAAGGGGAATTCAGAATCCCAAGAGGGTGGAACCAGTGATCCGAATGAAGAAATGGTTGTTCCTGATGTTGATAAAAAGCTGCTTGAGGAACTTGAATCAATGGGCTTTTCAACAGCTCGTGCAACAAGGGCACTTCATTTTTCTGGTAACACTAGCCTCGAGGCTGCTGTAACTTGGATAGAAAACCACGAGAATACGCCTGACATAGATGAAATGCCCTTGGTATCTGCCGTCAGTAAAGCTAAAGCTTCTAAACCCTCTCTTACCCCAGAAGAAACAAATGCCATTCTAAAGGATCTAAGGGAGAAGGCTCGCAAGAAGAAAGAAGAAGAAGAGAAGAGAACGGAGAGAGAAAGAGAAAAGGAGAGAATTCGAGTCGGTAAGGAGTTGCTTGAAGCAAAGAGGATTGAAGAAGACAACGAGAGAAAACGGTTGTTAGCTTTGAGGAAAGCAGAGAAAGAGGAAGAGCGAAGGGCTAGAGAGAGAATCAAACAAAAGTTGGAAGAAGACAAGGCGGAAAGAAGACGAAAACTTGGATTGGCTCCAGAGGAGCCTTCAACAGCCAAACCTTCAGCTGTTGTAGAGGAGAAAAAGAGTTTCCTGCCAATTAGGCCTGCCACAAAAACCGAGCAGATGAGGGAGTGCTTGCGTTCTCTCAAGCAGAACCACAAGGAAGATGATGCCAGAGTGAAGAGAGCATTCCAAACTCTGCTAACTTATGTGGGGAATGTTGCCAGAAATCCTGCTGAAGAAAAATTCAGGAAGATTCGTCTTAGTAACGCAGCTTTTCAGGAAAGAGTTGGTGCTTTGAAAGGAGGCATTGAATTCCTTGAAATTTGCGGGTTTGAGAAGATCGATGGCGGTGAAGTTTTGTTTTTGCCTAGGGAGAAGGTTGATATTGCAGTCCTAAATTCAGCTGGATCTGAACTAGACTCTGCAATAAAGAATCCCTTTTTTGGAGTTCTTTAG 1227 0.4523 MAGVSLQCGDCGTLLKSVEEAQEHAELTSHSNFSESTEPVLNLVCSTCSKPCRSKTESDLHTKRTGHTEFSDKTAEAAKPISLEVPKGNSESQEGGTSDPNEEMVVPDVDKKLLEELESMGFSTARATRALHFSGNTSLEAAVTWIENHENTPDIDEMPLVSAVSKAKASKPSLTPEETNAILKDLREKARKKKEEEEKRTEREREKERIRVGKELLEAKRIEEDNERKRLLALRKAEKEEERRARERIKQKLEEDKAERRRKLGLAPEEPSTAKPSAVVEEKKSFLPIRPATKTEQMRECLRSLKQNHKEDDARVKRAFQTLLTYVGNVARNPAEEKFRKIRLSNAAFQERVGALKGGIEFLEICGFEKIDGGEVLFLPREKVDIAVLNSAGSELDSAIKNPFFGVL* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2876 408 Pfam PUB domain 315 386 IPR018997 -
Mtr8g2876 408 SMART uba_6 110 148 IPR015940 -
Mtr8g2876 408 Coils Coil 180 211 - -
Mtr8g2876 408 SUPERFAMILY PUG domain-like 290 404 IPR036339 -
Mtr8g2876 408 MobiDBLite consensus disorder prediction 185 208 - -
Mtr8g2876 408 PANTHER F13M7.16 PROTEIN 1 408 - -
Mtr8g2876 408 Coils Coil 222 259 - -
Mtr8g2876 408 CDD UBA_PUB_plant 108 156 - -
Mtr8g2876 408 Pfam UBA/TS-N domain 114 146 IPR015940 -
Mtr8g2876 408 MobiDBLite consensus disorder prediction 54 74 - -
Mtr8g2876 408 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 108 149 IPR015940 -
Mtr8g2876 408 SUPERFAMILY UBA-like 88 160 IPR009060 GO:0005515
Mtr8g2876 408 PANTHER F13M7.16 PROTEIN 1 408 - -
Mtr8g2876 408 MobiDBLite consensus disorder prediction 255 286 - -
Mtr8g2876 408 CDD PUB_UBA_plant 302 408 - -
Mtr8g2876 408 MobiDBLite consensus disorder prediction 53 105 - -
Mtr8g2876 408 Gene3D - 110 156 - -
Mtr8g2876 408 ProSitePatterns Zinc finger C2H2 type domain signature. 8 30 IPR013087 -
Mtr8g2876 408 Gene3D - 290 398 - -
Mtr8g2876 408 SMART PGNneu 318 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2876 Mtr-Chr8 39451591 39458213 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2876 96 408 C2H2 Transcription Factor Family AT1G04850 75.633 6.40e-142 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2876 K24348 - gmx:100779218 589.726