Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2855 ATGAATTCTGCACCACAATCCTCATCAGCCGCTGCCGCCGGCGGAAGCGGAGGAGGTCCGGCACCGTTTCTTCAGAAGACGTATGACATGGTGGATGATTCCACCACAGACGAGATCGTTTCGTGGAGCTCTGATAACAAAAGCTTCATTGTTTGGAACCCTCCTGAATTCTCTCGCGTTCTTCTCCCAACCTATTTCAAGCACAACAATTTCTCCAGCTTCATCCGTCAGCTCAATACCTATGGATTTCGAAAAGCAGATCCTGAGCGTTGGGAGTTTGCCAATGAAGAATTTATCAAAGATCAAAAACATCTTCTGAAGAATATACACCGCAGGAAACCTATCCACAGTCATAGTCATCCTCCGGGTTCTGCTGTAGATCCAGAAAGGGCAGCATTGGAGCAAGAAATAGAGAAGTTGTCTCGCGAGAAAAATGCTCTTCAAACCAAACTCTTAAGCTACAATTATCTCGATACAGAAAAGCTTCAGCTGGAAGATTTTCAGCGGCGATTGGATGGCATGGAGAAGAGGCAGACAAATTTGCAGAACTTCTTTGAGAAGGCTCTTCAAGATTCTTTTATTGTTGAACTTCTTTCCCGCAAAATTGAATCCATGGATTTGGCAGCTTATAATAAGAAAAGGCGATTGCCTCAGGTTGATCAGGTGCAGCCTGTTGCCGAAGGTAGCTTGGTTGACAATCCTAGCAATTTCAGACTGGAATTTGGGAATGTTTTCCCTCATGATATCTCAAATAAACTCAGACTGGAATTGTCACCAGCTGTCTCAGATATGAACTTGATATCAGGTAGCACGCAGGGTTCAAACGAAGATGAGGAAAGCCTGCAGAAAAATCTGTCTGAAGGAGAACTGACAGGAATGCAGACAAGAACTGGCCTTGCTTTTACACCTGAAACACTAGACCTTGCAGATACTGGGGCATCTTTCACTTTTAACATGGATTCGTGTTTATCACAAAGAGCAACAACTACTGAGTGCCCAAATCTTCACTCTCTGGAGCCGAGTACTGAAGAAGGCGATAGTCATATATCCTGCCAACTAAATTTAACTCTGGCATCTTGTACATTGGAATTCAATAGGAATTCATACTCGGCCAGGTCGCCCCAAATAAACTGTCAGGAAATTGGCAATTTGGCAGAGTCAAGAGTTAACGCTGATGGTAAAGAATCTGAAATTGGAGTTTCCTCAAACCGAAATGTGGCTAATGAGGCTATCAATCTAGCTCCACCAAAGGAGGCTTCAGGTAACGTCCAAGTCAAAGCAGCTGCTCGGCACGGAGTGAATGATGTGTTTTGGGAAAATTTCCTTACTGAAAGACCAGGCTGTTCAGACAATGAAGAGGCAATATCCAACTATCGAGCAATTCCAAATAGTGAGCAAGAAGAAGGGCGGTCAGTTCATGGAATCTCCAGTAACATCAAGAACATGGATAATCTCACCCTTTGA 1464 0.4392 MNSAPQSSSAAAAGGSGGGPAPFLQKTYDMVDDSTTDEIVSWSSDNKSFIVWNPPEFSRVLLPTYFKHNNFSSFIRQLNTYGFRKADPERWEFANEEFIKDQKHLLKNIHRRKPIHSHSHPPGSAVDPERAALEQEIEKLSREKNALQTKLLSYNYLDTEKLQLEDFQRRLDGMEKRQTNLQNFFEKALQDSFIVELLSRKIESMDLAAYNKKRRLPQVDQVQPVAEGSLVDNPSNFRLEFGNVFPHDISNKLRLELSPAVSDMNLISGSTQGSNEDEESLQKNLSEGELTGMQTRTGLAFTPETLDLADTGASFTFNMDSCLSQRATTTECPNLHSLEPSTEEGDSHISCQLNLTLASCTLEFNRNSYSARSPQINCQEIGNLAESRVNADGKESEIGVSSNRNVANEAINLAPPKEASGNVQVKAAARHGVNDVFWENFLTERPGCSDNEEAISNYRAIPNSEQEEGRSVHGISSNIKNMDNLTL* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2855 487 Gene3D - 18 113 IPR036388 -
Mtr8g2855 487 PRINTS Heat shock factor (HSF) domain signature 23 46 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr8g2855 487 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr8g2855 487 PRINTS Heat shock factor (HSF) domain signature 74 86 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr8g2855 487 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 15 483 IPR027725 -
Mtr8g2855 487 Pfam HSF-type DNA-binding 23 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr8g2855 487 SMART hsfneu3 19 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr8g2855 487 Coils Coil 130 150 - -
Mtr8g2855 487 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-5 15 483 - -
Mtr8g2855 487 MobiDBLite consensus disorder prediction 462 487 - -
Mtr8g2855 487 MobiDBLite consensus disorder prediction 1 22 - -
Mtr8g2855 487 SUPERFAMILY "Winged helix" DNA-binding domain 19 112 IPR036390 -
Mtr8g2855 487 Coils Coil 157 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2855 Mtr-Chr8 39218243 39221669 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2855 1 487 HSF AT4G13980 51.318 5.56e-146 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Mtr8g2855 HSF_DNA-bind 1.8e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2855 K09419 - gmx:100786408 700.279