Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2845 ATGCACCAAATCTCATTCATCATCATCGCGATCATCGCCGCCACCTTCGTGGTGGCCGACGATGACGGCACCGTCATGCAAAGCCTTCGGCAATCCCTTAAACCTTCTCCTAACGGCTGGTCTTCCAATACTTCCTTCTGTCAATGGTCCGGCGTCAAATGCTCATCCGACAACCGCGTCACCAGCATAAACCTCTCCGATCAAAAGCTCGCCGGAACCCTTCCCGATAATCTCAACTCCCTCACTCAACTCACAACTCTCTATCTCCAAAACAACGCTCTCTCCGGTCCTCTTCCTTCTCTCGCCAACCTCTCCTCCCTCACAGACGTTAATCTCGGCAGCAATAACTTCTCCTCCGTAACTCCCGGCGCATTTTCCGGCCTTAATTCACTCCAAACACTCTCCCTCGGAGAAAATATCAACCTCTCTCCGTGGACATTCCCTACCGAGTTGACTCAGTCTTCCAACCTCAACTCAATCGATATCAATCAAGCAAAAATCAACGGAACCTTACCAGACATTTTCGGTAGTTTCTCTAGTCTCAACACCCTTCATCTCGCATACAACAATCTCAGCGGAGGATTACCTAACTCTCTCGCTGGTTCCGGAATTCAGAGTTTTTGGATCAATAACAATTTACCTGGGTTAACCGGTTCAATCACTGTGATTTCCAACATGACATTGTTAACTCAGGTATGGCTTCATGTGAATAAATTCACCGGTCCAATTCCAGATTTATCGCAATGCAATAGTATAAAAGATCTGCAACTTAGGGATAATCAGTTAACTGGTGTGGTTCCTGATTCTCTGGTGAGCATGTCTGGCTTGCAGAATGTTACTCTAAGAAATAATCAGCTTCAGGGACCTGTTCCGGTGTTCGGTAAAGATGTGAAATATAATTCTGATGATATCAGTCATAATAACTTTTGTAATAATAATGCATCTGTACCTTGTGATGCTAGGGTTATGGATTTGCTTCATATTGTTGGTGGGTTTGGGTACCCTATTCAATTCGCGAAGTCATGGACAGGGAATGATCCTTGTAAGGATTGGTTGTGTGTTATATGTGGTGGGGGTAAGATTACCAAGTTGAATTTCGCGAAGCAGGGTTTGCAGGGAACAATTTCCCCTGCTTTTGCCAATTTGACTGATTTGACGGCTTTGTATCTAAATGGGAATAATTTGACTGGTTCTATACCTCAAAATTTAGCTACATTGTCTCAACTTGAGACTCTTGATGTCTCTAACAATGATCTATCAGGCGAGGTTCCCAAATTCTCACCAAAGGTGAAGTTTATAACTGATGGTAATGTTTGGCTTGGTAAAAATCATGGAGGTGGAGCGCCTGGTTCTGCTCCTGGTGGAAGTCCTGCTGGATCGGGAAAAGGTGCTTCGATGAAGAAAGTTTGGATTATTATAATAATAGTGCTTATTGTTGTGGGTTTTGTTGTTGGGGGGGCATGGTTTTCTTGGAAGTGTTATTCCAGAAAGGGGCTTCGGAGATTTGCTAGGGTTGGTAATCCTGAAAATGGGGAAGGAAATGTCAAACTCGATCTTGCGAGTGTTTCAAATGGATATGGTGGTGCTTCGAGTGAGTTGCAAAGCCAGAGCAGTGGTGATCATAGTGATCTTCACGGTTTTGATGGAGGAAATGGTGGAAATGCTACGATTTCGATTCATGTTCTTCGACAAGTGACAAATGATTTCAGTGACGATAACATTTTGGGAAGGGGAGGATTTGGTATTGTTTATAAAGGGGAGTTACCTGATGGAACTAAAATTGCTGTCAAGAGGATGATATCCGTCGCAAAGGGAAGCAAAGGGTTGAATGAGTTCCAAGCAGAGATTGGTGTTCTTACTAAGGTTAGGCATAGACATTTGGTTGCCCTTTTGGGATACTGCATCAATGGCAATGAGAGGCTTTTGGTGTATGAGCATATGCCTCAAGGGACATTAACGCAGCATCTGTTTGAATGCCGTGAACATGGGTACACTCCTTTGACATGGAAACAAAGGTTGATAATAGCTTTGGATGTTGGACGGGGGGTGGAATACCTGCACAGCTTAGCTCAGCAAAGCTTCATTCATAGAGACTTAAAACCATCAAATATACTATTAGGTGATGACATGAGAGCAAAGGTTGCAGACTTTGGGCTGGTTAAAAACGCACCGGACGGGAATTATTCTGTTGAGACAAAGTTGGCTGGAACATTTGGATATCTTGCACCCGAGTATGCAGCTACTGGAAGAGTGACAACCAAAGTGGATGTTTACGCATTTGGAGTAGTTTTGATGGAACTGATCACAGGTCGAAAGGCATTAGATGATTCTGTGCCCGATGAAAGTTCTCATTTGGTTACGTGGTTCCGTAGGGTACTGACTAACAAGGAAAACATTCCAAAGGCAATTGATCAAACTCTCGACCCGGACGAGGAAACAATGTTGAGCATATATAAAGTGGCTGAGCTGGCTGGCCATTGCACCACTCGTTCACCATACCAAAGGCCTGATATAGGGCATGCAGTGAATGTGTTGTGTCCTCTTGTGCAGCAATGGGAACCTACTACCCACACAGACGAAAGTACTTGTGCGGATGACAATCAGATGAGTCTTACTCAAGCACTACAAAGGTGGCAAGCCAATGAAGGCACTTCAACATTCTTCAATGGCATGACCTCACAAACACAGTCAAGTTCCACATCTAAACCTCCAGTGTTTGCAGATTCCCTTCATTCACCTGATTGCCGGTAG 2751 0.4427 MHQISFIIIAIIAATFVVADDDGTVMQSLRQSLKPSPNGWSSNTSFCQWSGVKCSSDNRVTSINLSDQKLAGTLPDNLNSLTQLTTLYLQNNALSGPLPSLANLSSLTDVNLGSNNFSSVTPGAFSGLNSLQTLSLGENINLSPWTFPTELTQSSNLNSIDINQAKINGTLPDIFGSFSSLNTLHLAYNNLSGGLPNSLAGSGIQSFWINNNLPGLTGSITVISNMTLLTQVWLHVNKFTGPIPDLSQCNSIKDLQLRDNQLTGVVPDSLVSMSGLQNVTLRNNQLQGPVPVFGKDVKYNSDDISHNNFCNNNASVPCDARVMDLLHIVGGFGYPIQFAKSWTGNDPCKDWLCVICGGGKITKLNFAKQGLQGTISPAFANLTDLTALYLNGNNLTGSIPQNLATLSQLETLDVSNNDLSGEVPKFSPKVKFITDGNVWLGKNHGGGAPGSAPGGSPAGSGKGASMKKVWIIIIIVLIVVGFVVGGAWFSWKCYSRKGLRRFARVGNPENGEGNVKLDLASVSNGYGGASSELQSQSSGDHSDLHGFDGGNGGNATISIHVLRQVTNDFSDDNILGRGGFGIVYKGELPDGTKIAVKRMISVAKGSKGLNEFQAEIGVLTKVRHRHLVALLGYCINGNERLLVYEHMPQGTLTQHLFECREHGYTPLTWKQRLIIALDVGRGVEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPDGNYSVETKLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELITGRKALDDSVPDESSHLVTWFRRVLTNKENIPKAIDQTLDPDEETMLSIYKVAELAGHCTTRSPYQRPDIGHAVNVLCPLVQQWEPTTHTDESTCADDNQMSLTQALQRWQANEGTSTFFNGMTSQTQSSSTSKPPVFADSLHSPDCR* 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2845 916 Pfam Leucine rich repeat N-terminal domain 19 55 IPR013210 -
Mtr8g2845 916 Pfam Leucine rich repeat N-terminal domain 337 356 IPR013210 -
Mtr8g2845 916 Gene3D Ribonuclease Inhibitor 320 443 IPR032675 -
Mtr8g2845 916 SUPERFAMILY L domain-like 32 427 - -
Mtr8g2845 916 MobiDBLite consensus disorder prediction 527 542 - -
Mtr8g2845 916 PANTHER OSJNBA0070M12.3 PROTEIN 8 909 - -
Mtr8g2845 916 Gene3D Phosphorylase Kinase; domain 1 534 646 - -
Mtr8g2845 916 ProSitePatterns Protein kinases ATP-binding region signature. 575 604 IPR017441 GO:0005524
Mtr8g2845 916 Pfam Protein tyrosine and serine/threonine kinase 573 804 IPR001245 GO:0004672|GO:0006468
Mtr8g2845 916 Gene3D Transferase(Phosphotransferase) domain 1 647 872 - -
Mtr8g2845 916 MobiDBLite consensus disorder prediction 527 546 - -
Mtr8g2845 916 PANTHER RECEPTOR-LIKE KINASE TMK4 8 909 - -
Mtr8g2845 916 Gene3D Ribonuclease Inhibitor 20 317 IPR032675 -
Mtr8g2845 916 ProSiteProfiles Leucine-rich repeat profile. 83 105 IPR001611 GO:0005515
Mtr8g2845 916 ProSiteProfiles Protein kinase domain profile. 569 849 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g2845 916 MobiDBLite consensus disorder prediction 890 906 - -
Mtr8g2845 916 Pfam Leucine rich repeat 362 419 IPR001611 GO:0005515
Mtr8g2845 916 Pfam Leucine rich repeat 102 139 IPR001611 GO:0005515
Mtr8g2845 916 MobiDBLite consensus disorder prediction 890 916 - -
Mtr8g2845 916 ProSitePatterns Serine/Threonine protein kinases active-site signature. 694 706 IPR008271 GO:0004672|GO:0006468
Mtr8g2845 916 SUPERFAMILY Protein kinase-like (PK-like) 557 865 IPR011009 -
Mtr8g2845 916 CDD STKc_IRAK 575 848 - -
Mtr8g2845 916 SMART serkin_6 569 849 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g2845 916 SMART LRR_typ_2 81 103 IPR003591 -
Mtr8g2845 916 SMART LRR_typ_2 178 201 IPR003591 -
Mtr8g2845 916 SMART LRR_typ_2 382 406 IPR003591 -
Mtr8g2845 916 SMART LRR_typ_2 104 127 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2845 Mtr-Chr8 39145472 39149384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2845 12 876 Receptor kinase-like Gene Family AT5G65700 28.878 2.96e-91 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Mtr8g2845 Pkinase 7.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2845 - - gmx:100781851 1161.36