Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2832 ATGGAAGAGGATTTCGAGTTTCCAACAGCAGGAAACATGGAAATGCCAGAGGAAGAGGAGGTGATGAGTCCGACTCAGAAAGTTGGCGAGGAGAAGGAGATTGGGAAGAATGGTTTGAAGAAGAAGCTTGTTAAGGAAGGTGAAGGGTGGGAAACTCCTGATAATGGAGATCAAGTTGAAGTTCATTATACTGGAATTTTGCTTGATGGAACCAAATTTGACTCGAGCCGTGATAGGGGTACCACTTTCAAGTTTAAGCTTGGTCAAGGGCAAGTGATCAAAGGGTGGGATGAAGGTATCAAAACCATGAAGAAGGGTGAAAATGCCATTTTCACAATACCCCCAGAGTTGGCTTATGGAGAATCTGGGTCTCCTCCCACTATTCCCCCAAACGCAGCTCTTCAGTTTGATGTGGAGTTGCTGTCTTGGACAAGTGTCAAGGACATTACCAAGGATGGTGGAATATTGAAAAACATAATAACTGAAGGAGAGAAATGGGACAATCCTAAGGACCCTGATGAAGTATTCGTTAAGTATGAAGCTCGTCTCGAAGAAGGAACAATCGTTTCAAAATCTGATGGGGTCGAGTTCACTGTTGAAGAGGGTTTTTTCTGTCCTGCTTTGGCCAAGGCTGTGAAAACAATGAAGAAGGGAGAGAAAGTTCTCTTGAATGTTAAGCCAGAATATGCATTTGGTGAGAGTGGAAAACCTTCATCAGGAAATAATGGTGCCATACCTCCAAATGCTTCACTTCAAATAGATCTCGAGTTAGTCTCATGGAAGACGGTATCTGACATTACTAAGGATAGGAAGGTCCTTAAGAAGACCTTGAAGGAAGGAGAGGGATATGAACGACCAAATGATGGAGCTGTGGTTCAGGTGAAACTTACCGGAAAGCTGCAAGATGGGACTGTCTTCTTTAAGAAAGGTCATGATGGTGATCAGCCATTTGAGTTCAGAATTGATGAAGAGCAAGTAATTGATGGGCTTGATAGAGCCGTTAAGAACATGAAGAAAGGGGAAATTGCATTGGTGATTATTCAACCTGAGTATGCTTTTGGTTCATCTGGGTCCCCTCAGGAATTGACTACTGTTCCTCCCAATTCCACCGTTTACTATGAAGTTGAGCTGCTTTCCTTTGTAAACGAAAAGGAATCATGGGATCTTAATACGCAAGAAAAGATTGAGGCAGCTGGAAAAAAGAAGGAAGAAGGGAATGCATTGTTCAAAGCCGGTAAACATGAAAGAGCATCAAAGAGATATGAGAAGGCCATAAGGTATTTTGAGTACGATTCCTCATTCAGTGATGAGGAGAAACAGCAGGCCAAAGCATTGAAAATTTCATGCAATCTTAATGACGCGGCATGTAAGTTGAAACTCAAGGACTACAAACAGGCAGAGAAGTTGTGCACAAAGGTGTTAGAGCTTGATAGTAGAAACGTAAAAGCCCTATACCGAAGGGCACAAGCATATATTCATCTCATTGACTTGGATTTGGCTGAAATGGATATTAAGAAAGCCCTTGAAATTGATCCAGATAACCGGGATGTCAAGATTGAGTACAAAATTTTGAAGGACAAAGTGAGAGAATACAACAAGAAGGATGCACAATTTTATGGAAATATATTTGCCAAAATGAATAAAGTAGAACAAGCAAGAACTGCAGCAGCAAAGCAGGAGTCTGTGCCAATGGCTGTCGATAGTCAAGCTTAG 1713 0.4186 MEEDFEFPTAGNMEMPEEEEVMSPTQKVGEEKEIGKNGLKKKLVKEGEGWETPDNGDQVEVHYTGILLDGTKFDSSRDRGTTFKFKLGQGQVIKGWDEGIKTMKKGENAIFTIPPELAYGESGSPPTIPPNAALQFDVELLSWTSVKDITKDGGILKNIITEGEKWDNPKDPDEVFVKYEARLEEGTIVSKSDGVEFTVEEGFFCPALAKAVKTMKKGEKVLLNVKPEYAFGESGKPSSGNNGAIPPNASLQIDLELVSWKTVSDITKDRKVLKKTLKEGEGYERPNDGAVVQVKLTGKLQDGTVFFKKGHDGDQPFEFRIDEEQVIDGLDRAVKNMKKGEIALVIIQPEYAFGSSGSPQELTTVPPNSTVYYEVELLSFVNEKESWDLNTQEKIEAAGKKKEEGNALFKAGKHERASKRYEKAIRYFEYDSSFSDEEKQQAKALKISCNLNDAACKLKLKDYKQAEKLCTKVLELDSRNVKALYRRAQAYIHLIDLDLAEMDIKKALEIDPDNRDVKIEYKILKDKVREYNKKDAQFYGNIFAKMNKVEQARTAAAKQESVPMAVDSQA* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2832 570 Gene3D - 262 382 IPR046357 GO:0003755
Mtr8g2832 570 Gene3D - 31 147 IPR046357 GO:0003755
Mtr8g2832 570 SUPERFAMILY FKBP-like 264 398 - -
Mtr8g2832 570 Gene3D Tetratricopeptide repeat domain 384 541 IPR011990 GO:0005515
Mtr8g2832 570 MobiDBLite consensus disorder prediction 20 34 - -
Mtr8g2832 570 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 283 378 IPR001179 GO:0003755
Mtr8g2832 570 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 169 258 IPR001179 GO:0003755
Mtr8g2832 570 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 51 141 IPR001179 GO:0003755
Mtr8g2832 570 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 270 380 - -
Mtr8g2832 570 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 267 - -
Mtr8g2832 570 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 382 551 - -
Mtr8g2832 570 SMART tpr_5 447 480 IPR019734 GO:0005515
Mtr8g2832 570 SMART tpr_5 481 514 IPR019734 GO:0005515
Mtr8g2832 570 SMART tpr_5 398 431 IPR019734 GO:0005515
Mtr8g2832 570 Gene3D - 148 261 IPR046357 GO:0003755
Mtr8g2832 570 Pfam Tetratricopeptide repeat 482 514 IPR019734 GO:0005515
Mtr8g2832 570 Coils Coil 514 534 - -
Mtr8g2832 570 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 56 144 IPR001179 GO:0003755
Mtr8g2832 570 SUPERFAMILY FKBP-like 33 149 - -
Mtr8g2832 570 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 289 381 IPR001179 GO:0003755
Mtr8g2832 570 PANTHER PEPTIDYLPROLYL ISOMERASE 270 380 - -
Mtr8g2832 570 PANTHER PEPTIDYLPROLYL ISOMERASE 1 267 - -
Mtr8g2832 570 PANTHER PEPTIDYLPROLYL ISOMERASE 382 551 - -
Mtr8g2832 570 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 172 261 IPR001179 GO:0003755
Mtr8g2832 570 SUPERFAMILY TPR-like 387 547 IPR011990 GO:0005515
Mtr8g2832 570 SUPERFAMILY FKBP-like 146 264 - -
Mtr8g2832 570 MobiDBLite consensus disorder prediction 1 34 - -
Mtr8g2832 570 ProSiteProfiles TPR repeat profile. 481 514 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2832 Mtr-Chr8 39015176 39018755 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2832 15 570 Calmodulin-binding Proteins AT5G48570 73.571 0.0 842
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2832 K09571 - gmx:100810243 990.334