Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2813 ATGTCCAGATTCAATAATACCATGTCATCTGGTTACGAATATGATATCGATGATCTGTATCAAGAAGCTCAAAGGAGGTGGCTGAAGCCTGCAGAAGTGATGTACATTTTACAGAATCATGAAAAGTATCAGTTCACTCAAGAGCCCCCGCAACAGCCAACAAGCGGTTCGCTGTTTCTGTTTAACAGAAGAGTATTGCGTTTCTTCCGGAAAGATGGTCATGCCTGGCGGAAGAAAAGAGATGGAAGAGCTGTAGGAGAAGCCCACGAGCGGCTGAAGGTTGGAAATGTTGAAGCCATAAATTGTTACTATGCACATGGAGAGCAGAACCCTACTTTCCAGAGGCGGAGCTATTGGATGTTGAATCCGGAATTTGACCACATTGTTCTCGTTCATTACAGAGACACAAGTGAGGGAAGGCTCAGTTCTGGACCTGGCACACAATTGTCACCGGGTTCTTCTGCGTATAGTCCGACTCCTAGCTCATATAGTACTCAGAATCCAGGGTCAACGTCCGTTGTTTATGACGCCTATGAACCTAATCAGAGCTTCTCCAGTCCTGGATCTGCAGAAGTTACCTCTTATAACAATGGAATGAGTTACTCAGAAGGAGCAGAAGCAGAATCAGAAACCTCAGCTGACTTTAAGGTTACTCAAGCTTTGCGCCGATTGGAGGTGCAGTTAAGTTTGAATGAGGACAACATTGAAGAAATTGCTCCCTTCTACGACGAGCATGAAGCTGCCCGCGATTCCAAACCACAGAATCATCAAGGGATGATGTGCAAGCAAGAGGAATCTGCAGCTCTCTCTGGACCAGTTAACCAGGGGCTATTTTATGATGGATATAATGGAAGGCAAGGTGATAGTGGTGAAAGTTATCATGAATTACTAGACCATGATTTCCCTGATGAAAATGAAAAGACTTTATCATGGAAAAATGTATACATGCCAGCAGCAGGAAATGAGAGTTCACCATCTTCTTCATTAAGGGAACCAGTTACGAACCCGGAAAACTATTGCTGGACAAATTTCAACACTGATAATGCTGGAAACTCTGTTTTCTCACTACCTCAAGGTGTTGGTGAAGTCACACTTCCTCCATATTCTTCTTTGGATGAAACACAAGAAAGTCGTTCTAGCTACTATTCGACATTGTTTGACCAAAGCCAAATTGGAGCATCTCATGATGCAGGTTCAAGTTTAACTGTTTCACAAAAACAGAAATTTACTATTAAGGCAGTCTCCCCAGAATGGGGTTATTCCTCTGAGACTACAAAGGTTTTCATTATTGGGTCTTTTCTGTGTCATCCCTCTGATTCTGCCTGGGCCTGTATGCTTGGTGATGTTGAAGTTCCTGTTGAGCTAGTTCAGGATGGTGTAATGTGTTGTGAAGTTCCATCTCACATTCCTGGAAAGGTTACTCTCTGCATTTCATCTGGAAACCGGGAGTCATGCAGTGAAGTCAGAGAGTTTGAGTATCGTGATAAGATCAAGAAGTTCACCGACCCTGCTCCATTGGAAAGAGAAGCCACTAGAACTCCAGATGAGCTGTTATTACTTGTTAGATTTGGGCAGATGCTCCTTTCTGAGTCATCTGTAAGTAATGATAACAACGAATCGGGAATTTTCATAAAACAGAAGGCTGATGATGATTCATGGAGCCATATTATAGAGGCTCTTCTATTTGGCAGTGAAAATTCTTCTGGTACTATCAATTGGCTTCTTGAAGAGCTACTAAAGGATAAGCTACAGGTGTGGCTTACTTCCAGATCCCGGGAAGTTGATGAAGAGATGGGATGTTCTTTGTCCAAGAAAGAGCAGGGGATCATTCACATGGTTGCTGGGTTGGGTTTTGAGTGGGCCTTGAACCCTATTCTCAGTTGTGGTGTGAATATAAATTTCCGTGATGTCAATGGGTGGACTGCCCTTCATTGGGCTGCACGTTTTGGGAGGGAAAAAATGGTTGCATCACTTATAGCTTCTGGTGCATCTGCTGGAGCGGTGACAGATCCAAGTGCACAAGATCCAATTGGTAAAACTGCGGCATCCATTGCAGCTAGCAGCAGGCATAAGGGACTGGCAGGGTATCTTTCAGAGGTAGCTCTAACAAGCCATCTGTCATCTCTTACACTGGAAGAGAATGAGCTATCTAAAAGTTCTGCGGAGCTTCAAGCAGATTTAACTGTTAGTAATGTCTCCAAGGAAAATATTGCTTTCAGTGAGGATCGGACCTCACTTAAAGATACCTTAGCTGCTGTCAGAAATACAACTCAGGCAGCTGCACGGATACAAGCTGCTTTTCGTTCACATTCATTTAGAAAACGGAGAACAAAAGAAACAAATGGTGTTATGAGCGGACATGATATAAGTGCAAGTGGTGTTGGTGACATGCCAGAGCTTTATGCTATGTCAAAACTTGCCTTTCGAAACTCACGTGAACATAATTCAGCTGCATTATCAATTCAGAAGAAATATCGAGGTTGGAAAGGTCGCAAAGATTTCCTATCATTGCGCCAAAAAGTAGTGAAGATACAGGCTCATGTGAGAGGTTACCAAGTTAGGAAGCATTACAAAGTGTTATGGGCAGTTGGAATCTTGGACAAGGTTGTGCTAAGATGGCGGAGAAAAGGAGTCGGTTTACGGGGCTTCAAACCAGAGATGCAGGTTAACGAAAATGAAGATGAAGATATTCTCAAAGTGTTCCGAAAACAGAAAGTTGATGTGGAAATTGAAAAGGCTGTCTCAAGAGTACTGTCCATGGCCAAATCTCCTGATGCTCGTGAGCAATATCATCGCATGCTTGAGAAGTATCGTCAAGCCAAGGCTGAACTTGCACAAACAAGTGAAGAAAAATCGGTAACAACTTCTGTAGAAGATTTTTTAAACATGGATGATGATTTTTACTAA 2907 0.4293 MSRFNNTMSSGYEYDIDDLYQEAQRRWLKPAEVMYILQNHEKYQFTQEPPQQPTSGSLFLFNRRVLRFFRKDGHAWRKKRDGRAVGEAHERLKVGNVEAINCYYAHGEQNPTFQRRSYWMLNPEFDHIVLVHYRDTSEGRLSSGPGTQLSPGSSAYSPTPSSYSTQNPGSTSVVYDAYEPNQSFSSPGSAEVTSYNNGMSYSEGAEAESETSADFKVTQALRRLEVQLSLNEDNIEEIAPFYDEHEAARDSKPQNHQGMMCKQEESAALSGPVNQGLFYDGYNGRQGDSGESYHELLDHDFPDENEKTLSWKNVYMPAAGNESSPSSSLREPVTNPENYCWTNFNTDNAGNSVFSLPQGVGEVTLPPYSSLDETQESRSSYYSTLFDQSQIGASHDAGSSLTVSQKQKFTIKAVSPEWGYSSETTKVFIIGSFLCHPSDSAWACMLGDVEVPVELVQDGVMCCEVPSHIPGKVTLCISSGNRESCSEVREFEYRDKIKKFTDPAPLEREATRTPDELLLLVRFGQMLLSESSVSNDNNESGIFIKQKADDDSWSHIIEALLFGSENSSGTINWLLEELLKDKLQVWLTSRSREVDEEMGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVNINFRDVNGWTALHWAARFGREKMVASLIASGASAGAVTDPSAQDPIGKTAASIAASSRHKGLAGYLSEVALTSHLSSLTLEENELSKSSAELQADLTVSNVSKENIAFSEDRTSLKDTLAAVRNTTQAAARIQAAFRSHSFRKRRTKETNGVMSGHDISASGVGDMPELYAMSKLAFRNSREHNSAALSIQKKYRGWKGRKDFLSLRQKVVKIQAHVRGYQVRKHYKVLWAVGILDKVVLRWRRKGVGLRGFKPEMQVNENEDEDILKVFRKQKVDVEIEKAVSRVLSMAKSPDAREQYHRMLEKYRQAKAELAQTSEEKSVTTSVEDFLNMDDDFY* 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2813 968 ProSiteProfiles IQ motif profile. 837 862 IPR000048 GO:0005515
Mtr8g2813 968 Coils Coil 927 950 - -
Mtr8g2813 968 CDD IPT 410 495 - -
Mtr8g2813 968 Pfam IPT/TIG domain 410 493 IPR002909 -
Mtr8g2813 968 MobiDBLite consensus disorder prediction 140 211 - -
Mtr8g2813 968 ProSiteProfiles IQ motif profile. 814 843 IPR000048 GO:0005515
Mtr8g2813 968 Pfam IQ calmodulin-binding motif 816 834 IPR000048 GO:0005515
Mtr8g2813 968 Pfam IQ calmodulin-binding motif 839 858 IPR000048 GO:0005515
Mtr8g2813 968 Gene3D - 813 862 - -
Mtr8g2813 968 ProSiteProfiles IQ motif profile. 756 785 IPR000048 GO:0005515
Mtr8g2813 968 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 4 12 963 - -
Mtr8g2813 968 Pfam Ankyrin repeats (3 copies) 620 698 IPR002110 GO:0005515
Mtr8g2813 968 Gene3D - 517 700 IPR036770 -
Mtr8g2813 968 ProSiteProfiles Ankyrin repeat region circular profile. 638 664 - -
Mtr8g2813 968 SMART CG_1_2 19 137 IPR005559 GO:0003677
Mtr8g2813 968 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 12 963 - -
Mtr8g2813 968 ProSiteProfiles Ankyrin repeat profile. 638 670 IPR002110 GO:0005515
Mtr8g2813 968 SUPERFAMILY Ankyrin repeat 606 699 IPR036770 -
Mtr8g2813 968 SMART ANK_2a 881 910 IPR002110 GO:0005515
Mtr8g2813 968 SMART ANK_2a 638 667 IPR002110 GO:0005515
Mtr8g2813 968 MobiDBLite consensus disorder prediction 137 211 - -
Mtr8g2813 968 ProSiteProfiles CG-1 DNA-binding domain profile. 16 142 IPR005559 GO:0003677
Mtr8g2813 968 SUPERFAMILY E set domains 410 494 IPR014756 -
Mtr8g2813 968 Pfam CG-1 domain 22 135 IPR005559 GO:0003677
Mtr8g2813 968 Gene3D Immunoglobulins 403 497 IPR013783 -
Mtr8g2813 968 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 803 861 IPR027417 -
Mtr8g2813 968 SMART iq_5 836 858 IPR000048 GO:0005515
Mtr8g2813 968 SMART iq_5 813 835 IPR000048 GO:0005515
Mtr8g2813 968 SMART iq_5 755 777 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2813 Mtr-Chr8 38821707 38830573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2813 6 947 CAMTA Transcription Factor Family AT1G67310 51.613 0.0 895
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Mtr8g2813 CG-1 9.6e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2813 K21596 - gmx:100786880 1420.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2813 8 38821707 38830573 Mtr8g2813 8 38821707 38830573 ECH
Mtr3g2786 3 41872137 41882051 Mtr8g2813 8 38821707 38830573 PCT