Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2807 ATGGACTTGAATGCAATATCTCCCTCTTCCCAGTGGGACTGGGAGCACCAATCATTCTTCAATGCAAAAGCAACTGAATATCCAAAATTACAACCACCAAGCTGGAGTATCGAACAAGACCGAGAAATCAATGTCGGGTTGTTCGATACACCCGGTGGAAGTGGTATTTTTGGCTCTGCATCAAGGAGTTCAAAATCAGCTTCAAATAGTTCATCGTTAAATAGGAATAATAGCAAAACATGTATATTTGCTTGTGGAAATTCTCATACACCAGAGCTTTCTTCTGTCTCTGGTGAACCATTGCTCACTCTACTCGGAAAACGAGTGTACATTGAGGATGTATGTCCGAAAAGTGATTCCAAAAACCTATCTTTTTCAAGGGATCTTGCGTCATCTTTAAGTATTGGAAAGAAATGTAAGTTCAATAGTCAGAACTTGCAATTTCCGCGATGCCAGGTTGAAGGTTGTGGCCTTGACCTTTCATCAGCAAAAGATTATCATCGGAAACGAAGAGTTTGTGAAAGTCATTCCAAATCTCCTATGGTGGTTATAGATGGTATGGTACGTCGATTTTGCCAGCAATGTGGCAGGTTCCACAATCTGGCTGAGTTCGATGAAAAGAAAAGAAGCTGCAGAGAACAACTTTCACGTCACAATGCAAGGCGACGTAAGCATCAGCCTGAAGCACTCCAATCAAGTCAATCAGTTTTGTCTTCACGCTGTGATGGAAAGCAACAGATGAGTCCATTTGCTAATTCAAAGACTGCTACAAATTTAGCCTGGCAAAACATGCAGAACAGCAAGCTCCCCCAAGCAAAAGATTTTCTCTTGAAGCCTGCAAAAGACAACGCTAACACACAAGGTGTAGAAGATTTCATTACCGTTTCTGATACAAATGATGAACAAGACTTTATTTGTGCTCTCTCTCTTCTGTCAACCAATCCATGGGATTCATATGCGACTAAATCCATGTCTCTAGAACATTCTAATCGTCCAACCAGTGCTGTTCAAGCTGTAACTCATCCAATGAGTCAGCGCATGCCTCTTGCTTGA 1053 0.416 MDLNAISPSSQWDWEHQSFFNAKATEYPKLQPPSWSIEQDREINVGLFDTPGGSGIFGSASRSSKSASNSSSLNRNNSKTCIFACGNSHTPELSSVSGEPLLTLLGKRVYIEDVCPKSDSKNLSFSRDLASSLSIGKKCKFNSQNLQFPRCQVEGCGLDLSSAKDYHRKRRVCESHSKSPMVVIDGMVRRFCQQCGRFHNLAEFDEKKRSCREQLSRHNARRRKHQPEALQSSQSVLSSRCDGKQQMSPFANSKTATNLAWQNMQNSKLPQAKDFLLKPAKDNANTQGVEDFITVSDTNDEQDFICALSLLSTNPWDSYATKSMSLEHSNRPTSAVQAVTHPMSQRMPLA* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2807 350 MobiDBLite consensus disorder prediction 229 245 - -
Mtr8g2807 350 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 286 347 - -
Mtr8g2807 350 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 19 284 - -
Mtr8g2807 350 Gene3D - 147 212 IPR036893 GO:0003677|GO:0005634
Mtr8g2807 350 Coils Coil 201 221 - -
Mtr8g2807 350 MobiDBLite consensus disorder prediction 328 350 - -
Mtr8g2807 350 SUPERFAMILY SBT domain 149 230 IPR036893 GO:0003677|GO:0005634
Mtr8g2807 350 MobiDBLite consensus disorder prediction 215 245 - -
Mtr8g2807 350 ProSiteProfiles Zinc finger SBP-type profile. 148 225 IPR004333 GO:0003677
Mtr8g2807 350 Pfam SBP domain 151 224 IPR004333 GO:0003677
Mtr8g2807 350 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 19 284 IPR044817 GO:0003677
Mtr8g2807 350 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 286 347 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2807 Mtr-Chr8 38770150 38772869 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2807 1 341 SBP-box Gene Family AT5G43270 37.240 7.41e-49 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Mtr8g2807 SBP 8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2807 - - mtr:MTR_8g080670 377.096