Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2806 ATGGACTTGAATGCAATATCTCCCTCTTCACAGTGGGAATGGGATCACCTACCATTACTCGATACAAAAGCAACTGAAAACCAAAAATTACAACCACCAAACTGGACTATGGAACTTGACCCAGAAATCAATTTCGGGTTGTATGATACGCCCGTTGGAAGTGGTTCTTCTGGCTCTGACCTAATTCACGGTTCAGCATTTAATGCACCAAAGTTTTCTTGTGTATCTGGTGAACCATTGCTCAATCCAAGACTTGGTAAAAGGATGTATTTTGAGGAAGTTTGTCCAGAAAGTGATTCCAAAAACCTTTCTTTTTCAAGGGATCTCATGTCATCTTTAATTCTTGAAAAGAAATGCAAGTCCAATGGTCAGAACTTACAATGTCCACCACACTGCCAGGTTGAAGGTTGTGGCCTTAACCTTTCATCGGCAAAAGATTATCATTGCAAACGAAGAGTTTGTGAAAGTCATGCCAAATCTCCTATGGTGGTTATAGATGGTTTGGAACGTCGATTTTGCCAGCAATGTAGCAGGTTCCATGATCTGTTTGAGTTTGATGGAAAGAAGAAAAGCTGCAGACGACAACTTTCAAATCACAATGCAAGGCGCCGTAAATATCATCGTCAAGCTGTCCAATCAAGCCAATCGGCTTTGTCTTATTCACGCAGTGATGGGAAGCAACAGATGAGTCCATTTACTAATTCCAAGACTGCTACAAATTTAGCCTGGCAAAACATGCACAACAGCAAGCTCCCCCAAGCAAAAGATTTTCTCTTGAAGCCTTCAAAAGACAACATTGACACACCAAGTGTAGAAGATTTCATGAACTTTTCTGATACAAATGCTACACAAGACTTTACTTGTGCTCTCTCTCTTCTGTCAACCAATCAGTGGGATTCATATGCGACTAAATCCATTTCTCAAGAACATTCTAATCGCCCGACCAGTCCTTTTCAAGCCACAACTCATGCAATGAGTCAGTGCATTCCTCTTGCTTCATCAGAACCGTGCTGTGGTCATCATGATCAATATGTCAATTCCAACATCTGGATCTCAAATTCTGCAGATAGCAATCACTTTCAGAAATTTCAACTGTTCAGAGAACCTTATGAGTTATGA 1119 0.4075 MDLNAISPSSQWEWDHLPLLDTKATENQKLQPPNWTMELDPEINFGLYDTPVGSGSSGSDLIHGSAFNAPKFSCVSGEPLLNPRLGKRMYFEEVCPESDSKNLSFSRDLMSSLILEKKCKSNGQNLQCPPHCQVEGCGLNLSSAKDYHCKRRVCESHAKSPMVVIDGLERRFCQQCSRFHDLFEFDGKKKSCRRQLSNHNARRRKYHRQAVQSSQSALSYSRSDGKQQMSPFTNSKTATNLAWQNMHNSKLPQAKDFLLKPSKDNIDTPSVEDFMNFSDTNATQDFTCALSLLSTNQWDSYATKSISQEHSNRPTSPFQATTHAMSQCIPLASSEPCCGHHDQYVNSNIWISNSADSNHFQKFQLFREPYEL* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2806 372 ProSiteProfiles Zinc finger SBP-type profile. 129 206 IPR004333 GO:0003677
Mtr8g2806 372 MobiDBLite consensus disorder prediction 196 231 - -
Mtr8g2806 372 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 72 264 IPR044817 GO:0003677
Mtr8g2806 372 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 271 371 IPR044817 GO:0003677
Mtr8g2806 372 MobiDBLite consensus disorder prediction 210 231 - -
Mtr8g2806 372 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 271 371 - -
Mtr8g2806 372 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 72 264 - -
Mtr8g2806 372 Gene3D - 128 193 IPR036893 GO:0003677|GO:0005634
Mtr8g2806 372 Pfam SBP domain 132 205 IPR004333 GO:0003677
Mtr8g2806 372 SUPERFAMILY SBT domain 130 209 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2806 Mtr-Chr8 38766070 38769296 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2806 1 323 SBP-box Gene Family AT5G43270 34.783 1.88e-43 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Mtr8g2806 SBP 3.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2806 - - mtr:MTR_8g080670 445.662