Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2805 ATGGATTTGAATGCAAAATCTCCCTCTTCACAGTGGGAATGGGATCACCTACCATTACCGGATACAAAAGCTACTGAAAATAAAAAATTACAACCACCAAACTGGAGTATCAAATTAGACCGAGAAAATAATGTCTGGTTGTTCGATACGCCAACTGGAAGTGGTTATTCTGGCTCTGAGCTAATTCCTGGTTCTACATCAGGGAGTTCGAAATCAGATTCAATCAGTTCATCACCAACTAGGGATATTAGCAAAACCTGTAAATTTGCATTTGAAAGTTCCCATGATGATTCCAATGGTAAAATTGAATTACCTAAAGAAGGGCCTATTGAAGCTTCTAATGCACCAATGCTTTCTTGTGTATCTAGTGAACCATTGCTCAATCTAAAACTCGGTAAAAGGATGAAATTTGAGGACGTGTCATCTTTAGTGTTTGGAAGGAAATGTAAGTCCAATGATCAGAACTTACAATGTCCGCCTCTCTGCCAGGTTGAAGGTTGTGGCCTTGACCTTTCATCGGCAAAACATTATTATCGCAAACGAAGAGTTTGTGTAGATCATTCCAAATCTCCTATGGTAGTTATAGATGGTTTGGAACGTCGATTTTGCCAGCAATGTAGCAGGTTCCATGATCTGTTTGAGTTTGATGGAAAGAAGAAAAGCTGCAGACGACGTCTTTCACAACACAATGCAAGGCGCCGTAATCATTCTCGTAAAACTGCCCAATCAAGTCAATCAGCTTTGTCTTCGTCACCCTGTGATGGGAAGCAACAGATGAATCCATTTGCCTATTCAAAGACTGCTATAAATTTAGCCTTGCAAAACATACAAAACAGCGAGTTCCCCCGAATAAAAGATTTTCCCTTGAAGTATGCAAAAGTCAACATTGGCACACCAAGTTTTGTCACTATGCTATCTGATGATTCCGATGTCCATTTTACATCTAAAGTCCTTGAAACCAAGAGTATCAATGCAGGTCATTTCACGTCTTACTTTATAATTGAGCCTCGTGATATTGTACCAAGTTTAGATTGTTACATTTATCATGTTACCATAATCTATTTATTTTGGCTTTATTGA 1080 0.387 MDLNAKSPSSQWEWDHLPLPDTKATENKKLQPPNWSIKLDRENNVWLFDTPTGSGYSGSELIPGSTSGSSKSDSISSSPTRDISKTCKFAFESSHDDSNGKIELPKEGPIEASNAPMLSCVSSEPLLNLKLGKRMKFEDVSSLVFGRKCKSNDQNLQCPPLCQVEGCGLDLSSAKHYYRKRRVCVDHSKSPMVVIDGLERRFCQQCSRFHDLFEFDGKKKSCRRRLSQHNARRRNHSRKTAQSSQSALSSSPCDGKQQMNPFAYSKTAINLALQNIQNSEFPRIKDFPLKYAKVNIGTPSFVTMLSDDSDVHFTSKVLETKSINAGHFTSYFIIEPRDIVPSLDCYIYHVTIIYLFWLY* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2805 359 MobiDBLite consensus disorder prediction 57 81 - -
Mtr8g2805 359 MobiDBLite consensus disorder prediction 1 35 - -
Mtr8g2805 359 Pfam SBP domain 162 235 IPR004333 GO:0003677
Mtr8g2805 359 SUPERFAMILY SBT domain 160 239 IPR036893 GO:0003677|GO:0005634
Mtr8g2805 359 Gene3D - 158 223 IPR036893 GO:0003677|GO:0005634
Mtr8g2805 359 MobiDBLite consensus disorder prediction 224 255 - -
Mtr8g2805 359 MobiDBLite consensus disorder prediction 224 239 - -
Mtr8g2805 359 MobiDBLite consensus disorder prediction 240 255 - -
Mtr8g2805 359 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 19 323 - -
Mtr8g2805 359 ProSiteProfiles Zinc finger SBP-type profile. 159 236 IPR004333 GO:0003677
Mtr8g2805 359 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 19 323 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2805 Mtr-Chr8 38761309 38763489 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2805 1 234 SBP-box Gene Family AT1G27360 42.745 1.38e-41 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Mtr8g2805 SBP 1.3e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2805 8 38761309 38763489 Mtr8g2805 8 38761309 38763489 ECH