Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2788 ATGATGGATGTGGCCGCTGAGGTTGAAGAAAATCTGTTTGCTGTTAGTGATGCCAAGTTACATGGACAAATGTGCAAGGCTCTTTCTGTAATCTATTGCAAAGTATTGTCAATATTTCCTTCTTTAGAAGCAGCCAGGCCTAGGAGTAAAACCGGAATTCAGGCATTATGTTCGTTACATGTAGCTTTGGAGAAAGCCAAGAATGTTCTTCATCATTGCTCAGTGTGTAGTAAACTTTACCTGGCTGTAACTGGGGACTCCGTTCTCCTAAAATTTGAGAAGGCTAAGTGTGCTCTTGAAGATAGTCTCAGACGGGTGGAAGATATTGTTCCACAATCCATTGGATGTCAGGTTCAGGAGATTGTGAATGAATTTGCAGATGTAGAATTTGCACTCGACCCCTTAGAGAAGCAAGTTGGCGATGATTTAATTGCATTGCTCCAGCAGGGGAAAAAGTTTGATGACGATGGTGAAAGTTATGAGCTTGAATCTTTTCACCAGGCTGCTACTAGACTTGGAATCACATCTTCAAGAGTAGCTCTTGCTGAAAGAAGGGCTCTAAAGAAACTTATTGACAGGGCTCGGACTGAGGAAGACAAACGAAAGGAATCAATTGTTGCATATCTTTTGCATCTTATGAGGAAATACTCCAAGTTATTCAGAAATGAGTTTTCAGATGACACTGATTCTCAGGGTTCTGGTCCTTGTTCTCCCACTGTCCAGGGATCTATTGAGGATGGTGTTCCTGTTGGTCATAATCAGACCTTTGAAAGACAACTTTCAAAACTTAGTTCCTTTAATTTCAAGCCAAATAATAATATGGAGCCGGGGCAGATGGCTCTACCACCAGAAGAGTTAAGGTGTCCAATATCTCTTCAACTTATGTATGATCCTGTTATCATTGCTTCTGGGCAAACATATGAAAAGGTTTGCATAGAGAAATGGTTCGGTGATGGGCACAGCAACTGCCCGAAGACCCAACAAAACCTTCCACATCTTTACTTGACTCCTAATTACTGTGTTAAGGGTCTTGTTGCTAGTTGGTGTGAACAAAATGGAATTCCTATTCCTGAAGGCCCTCCAGAATCACTTGATCTTAACTATTGGAGATTGGTATTATCAGAGTCTGAGTCTACGAATTCAAGATCTGTAAATAGTGTCAGCTCTTGCAAGTTGAAGGGTGTCAAAGTGGTTCCTTTAGAAGAGAGGTGTATCTCGGAGGAATATGGGGAAAATGGAGCTGAAAGTTCATCTGCTCAAGAGGAAGACACTGAGCAGTATCTTAGTTTCCTGAAAGTCTTGACTGAGGGGAACAATTGGAAGAGGAAATATGAAGTGGTAGAACAGTTAAGGCTGTTGCTGAGGGATGATGAGGAAGCTAGGATTTATATGGGGGCTAATGGGTTTGTTCAAGCACTTGTTCAGTTTTTACAATCAGCTGTACATGAAAAGAATTTGATTGCTCAGGAAAGTGGAGCAATGGCTCTCTTCAACCTAGCTGTGAATAACGACAGAAATAAGGAGATTATGTTATCAGCCGGAGTTTTATCTTTGTTGGAGGAAATGAGTTCTAACACTAGTTCTTATGGTTGTGCAACTGCTCTGTATCTGAATCTCTCTTGCCTCGAAGAAGCCAAACCTATGATTGGCATGAGTCAGGCTGTACAATTCCTAACCCGGCTCCTTCAATCTGACTATGACATTCAATACAAGCAAGATGCTCTCCATGCTCTCTATAATCTTTCTACTGTGCCCTCCAATATTCCTTACTTACTTTCATCTGGCATTGTTAACGGCCTACAATCCCTTCTTGTAGACCAGAGTGATGATTGTACATGGACAGAAAAATGTATAGCTGTTTTGATAAATTTAGCCACTTCTCAAGTTGGAAGGGAGGAAATGGTTTCGAATCCTGGACTCATCAGTGCATTGGCTTCCATATTGGACACTGAGGAGCTTGAAGTGCAGGAGCAAGCTGTCTCTTGTCTCCTAATTTTGTGCAACAGAAGTGAGCAATGTTCTGACATGGTCCTGCAGGAAGGGGTTATACCTGCATTGGTATCAATATCAGTGAATGGGACCCCAAGAGGGAGAGAAAAAGCTCAGAAACTCTTGATGCTGTTCCGACAGCAGCGACGGGATGAATCACCTGTTGAAGTACATCAATGTCCTCCTGAAACTAGTGATTTGTCTGTGCCACCTGCTGAAATGAAACCTCTATGTAAGTCGATATCTAGAAGAAAGACCGGTAAACCTTTTAGCTTTTTCTGGAGAAGCAAGAGCTATTCTGTATACCAGTGTTGA 2304 0.4188 MMDVAAEVEENLFAVSDAKLHGQMCKALSVIYCKVLSIFPSLEAARPRSKTGIQALCSLHVALEKAKNVLHHCSVCSKLYLAVTGDSVLLKFEKAKCALEDSLRRVEDIVPQSIGCQVQEIVNEFADVEFALDPLEKQVGDDLIALLQQGKKFDDDGESYELESFHQAATRLGITSSRVALAERRALKKLIDRARTEEDKRKESIVAYLLHLMRKYSKLFRNEFSDDTDSQGSGPCSPTVQGSIEDGVPVGHNQTFERQLSKLSSFNFKPNNNMEPGQMALPPEELRCPISLQLMYDPVIIASGQTYEKVCIEKWFGDGHSNCPKTQQNLPHLYLTPNYCVKGLVASWCEQNGIPIPEGPPESLDLNYWRLVLSESESTNSRSVNSVSSCKLKGVKVVPLEERCISEEYGENGAESSSAQEEDTEQYLSFLKVLTEGNNWKRKYEVVEQLRLLLRDDEEARIYMGANGFVQALVQFLQSAVHEKNLIAQESGAMALFNLAVNNDRNKEIMLSAGVLSLLEEMSSNTSSYGCATALYLNLSCLEEAKPMIGMSQAVQFLTRLLQSDYDIQYKQDALHALYNLSTVPSNIPYLLSSGIVNGLQSLLVDQSDDCTWTEKCIAVLINLATSQVGREEMVSNPGLISALASILDTEELEVQEQAVSCLLILCNRSEQCSDMVLQEGVIPALVSISVNGTPRGREKAQKLLMLFRQQRRDESPVEVHQCPPETSDLSVPPAEMKPLCKSISRRKTGKPFSFFWRSKSYSVYQC* 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2788 767 PANTHER U BOX DOMAIN-CONTAINING 2 759 - -
Mtr8g2788 767 SMART arm_5 627 668 IPR000225 GO:0005515
Mtr8g2788 767 SMART arm_5 542 583 IPR000225 GO:0005515
Mtr8g2788 767 SMART arm_5 457 501 IPR000225 GO:0005515
Mtr8g2788 767 CDD RING-Ubox_PUB 286 328 IPR045210 -
Mtr8g2788 767 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 468 514 IPR000225 GO:0005515
Mtr8g2788 767 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 759 - -
Mtr8g2788 767 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 355 IPR013083 -
Mtr8g2788 767 ProSiteProfiles U-box domain profile. 281 355 IPR003613 GO:0004842|GO:0016567
Mtr8g2788 767 SMART Ubox_2 285 348 IPR003613 GO:0004842|GO:0016567
Mtr8g2788 767 SUPERFAMILY RING/U-box 279 357 - -
Mtr8g2788 767 Gene3D - 405 717 IPR011989 -
Mtr8g2788 767 SUPERFAMILY ARM repeat 430 710 IPR016024 -
Mtr8g2788 767 Pfam U-box domain 283 352 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2788 Mtr-Chr8 38550068 38555017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2788 2 766 U-box Gene Family AT1G24330 65.385 0.0 1004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2788 - - gmx:100794099 1261.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2817 3 42153339 42158196 Mtr8g2788 8 38550068 38555017 PCT