Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2781 ATGCAGTTTGATTCCGATTCAGATTCCGACGGTTCTCACATTTCCTCAACTCCACCAAGACAACAACCAAATTCACCACCACCACCAAAACCACCTCTTCCAGTTTCAAACAAAAAATCCAAAACCAAAACCAAAACCTCAAAATCCAATAAACCCCTTTCTAAACCCCCCGAAATTCTTCCCGAACAAGAATCTTTCCCCTTCCCTTCCATCCCCTCACTTCCTTTCAACATCCGACAACGAACGTCTGACGCTCCTTCAACTTCATCTTCTCACTCTATCGAAACCCTCCCTGCCGGATTCTTCTCCAAATCAATTTCATTCTCCAAAATTCGTAAACCCTTACTCAACCTAGAAACATCCGAAGCCGAACCGGTTGTTGATTCTGCAAAAACTGTAGCGAAATCTGTGAAGAAACATCCGAATTTGATAGGTGCTAGTGTGGTAACGCCGATAGTGAAGGCACTAAAAGGCGCTGGAGAAGGAAATTTTGTGAAATTGAATCTCAATGGTAAGAGGAAAAAGTTTTTGAATAAAGGATGGAAGAAAAATGGAAAATTTGGTAGTGGTAAAAGGTATTTTAGAAATAGTAATGGTAGTAATAGTGGTAGAAGTAGTAGAAGTAAACGTATAAAATCGGAATACAAAGAAGACGATGATGATGATGAGGGGGATGGTATGGGTGTTGAGAATGCAAAGCAACAGGAAAAGAAGAATGGTTGGGAAAATGAATGCGAAGTGTTGGAGGAGGCTGTGTTAGCAGCAAGAGATGATGCTTCTGATGAGAATTTGGTGAAGTTGTTGAAATTGATTCATGGTTTTGATTCTTTTCGAGAGGGGCAGCTTGAGGCGATTAAGAATGTGCTTGCTGGGAAATCGACGATGCTTATTTTGCCGACTGGTGCTGGGAAATCGTTGTGTTATCAATTGAGTGCGTTGATTTTGCCTGGGATTACGCTTGTTGTTAGTCCTTTGGTAGCTTTGATGATTGATCAGCTTCGACAATTGCCTCCGCTCATTTCGGGCGCTCTTCTAAGCAGTGCTCAGACATTTGAAGAATCCTCTGAAACGCTTAACCAGCTTCGTCAAGGCACAATAAAGGTGCTTTTTGTTTCACCAGAGCGATTCTTGAATGAAGAATTTCTGTCTGTTATCTCTGGTGGGTTAGCCGTCTCACTTGTTGTTATTGATGAAGCACATTGTATATCTGAATGGTCTCACAATTTCCGACCTTCATTCATGAGACTTAGAGCATCACTGCTTCATAAGAGTCTTAATGTAGGTTCTATCCTTGCAATGACAGCAACTGCCACAACCACGACTTTAGATGCCATTATGTCTGCCCTGGATATTCCTCGCACAAATCTTATTCAGAATGCACACTTAAGGGACAATTTGTGTTTGTCTGTGTCTTTGATAAAAAATAGAATGAAAGACCTACTGGTGCTTATGAAGTCTTCTCCTTTTGCGGAAGTTAAAAGCATCATAGTATACTGCAAATTTCAGTCTGAAACTGATCAAATTAGCAGATATTTGAATGATAACAATATCAAGGCAAAGAGTTATCATAGTGGTATTTCTGCAAAGGAACGTGGCTACGTACAGGAGTTGTTTGGTTCAAACAAGATCAGAGTGGTTGTTGCAACTGTGGCATTTGGCATGGGACTAGATAAAAGAGATGTTGGAGCAGTAATTCATTACAGTTTACCTGGAAGTCTGGAAGAGTATGTACAGGAGATAGGACGTGCCGGAAGGGATGGGAGGTTGTCCTATTGTCACCTATTTTATGATGATGAGATGTATTTCAAACTTCGTAGTCTAATGTACAGTGAAGGAATAGATGAATATGCAGTGAATAAATTTCTGTCTGAAGTGTTTCCTGCTGACAAAAGCTCCTGTGGGAAAATATGTTCGTTAATCAAAGAACCTGCTTCACGCAGGTTTGATATGAAAGAAGAGGTGATTCTCACAGTTTTGACACGCTTGGAGCTGGGTGACGTGCAGTACTTACATTTACTTCCACAGACAAATGCAACGTGTGTTCTGAATTTTCATATGACTCCGGCTGTGTCCCTTGCCCAAAAGGTTTCTGCTATTGCTGCAATTCTGAAAAGATCTGAAAATAAGCACGGACAATATACTTTTGATATTCCAACTGTGGCAAATGACATGGGGGTCACACCAGTTGAATTAACAAATCAGTTGTATGCCCTAAAGTTGAAGGGAGAAATAACTTATGAAATGAAGGACATGGCCTACTGTTATAGGATTCTTGAAGCCCCAGCAGACTTTTTTTCTCTATCAGCAGATATTACACGATGGTTATCGGAAGTTGAATGTTGTAAGGTACGAAAAATGGATGCAATGTTTAATGCTGCATATTTTGCAGTAAATCTATGTGATAAGATGAGTGGTTGCAGTAGTTCTGATCACACTTCATGCTTGCAAAGGATAATATTGGATTACTTTGCTGGAGTTGATAATGCTGATTTCTGCAAGAAAATTGATCAAAGCAGCCGTTTCCTGCGGGCAGATATAAAGGTTTTTCTACAGAGCAATTCACATGCTCGCTTTACACCAAGAGCTGTTGCGAGGGTAATGCATGGAATTGCAAGCCCAGCCTACCCTTATACAATATGGGGTAAAACCCATTTCTGGGGAAGGTATACCAAGATAGACTTTAACGTTGTGATGGAAGCAGCTAAGGAAGAACTTAAAACATTTATTGGAAAAGATTACTCTAGCAATTTATGA 2754 0.4034 MQFDSDSDSDGSHISSTPPRQQPNSPPPPKPPLPVSNKKSKTKTKTSKSNKPLSKPPEILPEQESFPFPSIPSLPFNIRQRTSDAPSTSSSHSIETLPAGFFSKSISFSKIRKPLLNLETSEAEPVVDSAKTVAKSVKKHPNLIGASVVTPIVKALKGAGEGNFVKLNLNGKRKKFLNKGWKKNGKFGSGKRYFRNSNGSNSGRSSRSKRIKSEYKEDDDDDEGDGMGVENAKQQEKKNGWENECEVLEEAVLAARDDASDENLVKLLKLIHGFDSFREGQLEAIKNVLAGKSTMLILPTGAGKSLCYQLSALILPGITLVVSPLVALMIDQLRQLPPLISGALLSSAQTFEESSETLNQLRQGTIKVLFVSPERFLNEEFLSVISGGLAVSLVVIDEAHCISEWSHNFRPSFMRLRASLLHKSLNVGSILAMTATATTTTLDAIMSALDIPRTNLIQNAHLRDNLCLSVSLIKNRMKDLLVLMKSSPFAEVKSIIVYCKFQSETDQISRYLNDNNIKAKSYHSGISAKERGYVQELFGSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPGSLEEYVQEIGRAGRDGRLSYCHLFYDDEMYFKLRSLMYSEGIDEYAVNKFLSEVFPADKSSCGKICSLIKEPASRRFDMKEEVILTVLTRLELGDVQYLHLLPQTNATCVLNFHMTPAVSLAQKVSAIAAILKRSENKHGQYTFDIPTVANDMGVTPVELTNQLYALKLKGEITYEMKDMAYCYRILEAPADFFSLSADITRWLSEVECCKVRKMDAMFNAAYFAVNLCDKMSGCSSSDHTSCLQRIILDYFAGVDNADFCKKIDQSSRFLRADIKVFLQSNSHARFTPRAVARVMHGIASPAYPYTIWGKTHFWGRYTKIDFNVVMEAAKEELKTFIGKDYSSNL* 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2781 917 MobiDBLite consensus disorder prediction 191 206 - -
Mtr8g2781 917 MobiDBLite consensus disorder prediction 188 238 - -
Mtr8g2781 917 PANTHER ATP-DEPENDENT DNA HELICASE Q4 49 837 - -
Mtr8g2781 917 MobiDBLite consensus disorder prediction 1 94 - -
Mtr8g2781 917 Gene3D - 455 654 IPR027417 -
Mtr8g2781 917 Pfam DEAD/DEAH box helicase 280 441 IPR011545 GO:0003676|GO:0005524
Mtr8g2781 917 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 317 599 IPR027417 -
Mtr8g2781 917 SMART helicmild6 506 587 IPR001650 -
Mtr8g2781 917 Pfam Helicase conserved C-terminal domain 491 586 IPR001650 -
Mtr8g2781 917 CDD DEXHc_RecQ4-like 265 462 - -
Mtr8g2781 917 PANTHER DNA HELICASE RECQ FAMILY MEMBER 49 837 - -
Mtr8g2781 917 SMART ultradead3 273 459 IPR014001 -
Mtr8g2781 917 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 476 626 IPR001650 -
Mtr8g2781 917 MobiDBLite consensus disorder prediction 20 35 - -
Mtr8g2781 917 MobiDBLite consensus disorder prediction 1 19 - -
Mtr8g2781 917 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 392 401 IPR002464 -
Mtr8g2781 917 Coils Coil 231 258 - -
Mtr8g2781 917 MobiDBLite consensus disorder prediction 75 94 - -
Mtr8g2781 917 CDD SF2_C_RecQ 463 596 - -
Mtr8g2781 917 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 267 614 IPR004589 GO:0004386|GO:0006310
Mtr8g2781 917 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 285 455 IPR014001 -
Mtr8g2781 917 Gene3D - 248 454 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2781 Mtr-Chr8 38469996 38478156 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2781 492 619 Eukaryotic Initiation Factors Gene Family AT3G19760 30.769 4.46e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2781 K10730 - gmx:100811214 1184.09