Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2762 ATGAAGCTTTCTTCAGCTGGGTTTAGTCCTCCACCTCAAGAAGGAGAAAAGCGGGTTCTAGATTCAGAACTTTGGCATGCTTGTGCTGGTCCTCTTGTTTGTTTGCCAGCTGATGGAAGCCGTGTGGTTTACTTTCCACAAGGTCACAGTGAACAGGTTGCTGTATCTACCAACAGGGAAGTTGATACTTATATTCCAAATCCAAGCTTACCTCCCCAACTTATTTGTCAACTTCATAATCTGACTATGCATGCAGATACGGAGACAGATGAAGTGTATGCACAAATGACCTTGCAACCTCTAAATCCTGAAGAGCAAAAGGAAGCATATCTTCCTGCAGAGTTGGGAACGGCAAATAAACAGCCAACAAACTACTTTTGCAAAATTTTGACAGCCAGTGATACAAGCACTCACGGAGGTTTCTCTGTTCCTCGCCGGGCAGCTGAAAAAGTTTTTCCTCCATTGGACTTTACACAACAACCTCCTGCTCAAGAGTTGATTGCAAGGGATTTGCATGGTAATGACTGGAAATTCAAACATATCTTCCGTGGCCAGCCGAAGAGGCATTTGCTTACAACAGGTTGGAGTGTCTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCAGTGCTGTTTATATGGAATGAAAAAAATCAGTTGCTTCTTGGCATTCGGCGTGCTAGTCGACCACAACATATGATGCCTTCATCAGTGTTGTCAAGTGATAGCATGCACTTGGGGCTGCTTGCTGCTGCAGCTCATGCAGCTGCAACAAACAGTCGTTTCACCATTTTCTATAACCCACGTGCTAGCCCATCAGAATTTGTCATTCCCCTAGCGAAGTATGTTAAGGCTGTATATCATACTCGAGTTTCAGTTGGTATGCGCTTCAGAATGCTTTTTGAAACAGAGGAATCTAGTGTTCGGCGATACATGGGAACAATAACCGGCATCAGTGACCTGGATTCTGTCCGGTGGCCAAATTCACATTGGCGCTCAGTGAAGGTTGGCTGGGATGAGTCCACAGCAGGTGAGAGGCAACCTAGAGTATCTCTGTGGGAAATTGAGCCACTAACAACCTTTCCAATGTATCCATCTCCGTTCCCCCTTAGGCTTAAAAGACCATGGCCTCCAGGACTGCCTTCATTCCATGGTTTGAAGGATGATGATTTTGGCATGAATTCTCCCCTATTGTGGCTTCGAGATGCTGATAGAGGGCTTCAGACTCTTAATTTTCAAGGGATGGGTGTTAATCCTTGGATGCAGGCAAGGCTTGATCCGTCCATGATGAATATGCAACCAGATATGTACCAGGCTATGGCTGCTGCTGCACTTCAGGATATGAGGACCTTAGATCCTTCTAAACAGCATCCTGCTTCCTTGCTTCAATTTCAGCAGCCGCAGAATTTCTCCAATGGTAATGCTGCTTTAATGCAGAATCAGATGTTGCAGCAATCTCAACCTCATCAGGCTTTTCCAAAGAATCAAGAAAGTCAGCATCCATCTCAATCTCAGGCCCAAACACAACAATTCCAGCAGCTTCTTCAGCATCAGCACTCATTCACTAATCAAAATTATCATATGCAACAGCAGCAGCAGCAACAGCAGCAGCAACAGCAGCAACAACAGCAGCAACATCAGCAGCAGCAACAACAACAATCACAACAGCAACAACAAGTTGTAGATCATCAACAGATGTCAAATGCCGTCTCCACAATGTCTCAGTTTGTTTCCGCACCTCCATCTCAATCAACCCAGCCCATGCAAGCCATTTCTTCAATTGGCCATCAACAAAACTTTTCGGACTCAAATGGGAACCCAGTTTCTCCTTTGCACAATATGTTAGGTTCATTTTCCAATGACGAAACATCTCACCTTCTCAACTTTCCTAGACCAAACTCTTGGGTTCCTGTTCAATCTTCAACTGCACGGCCCTCCAAGCGCGTTGCAGTGGACCCTCTCCTCTCTTCAGGAGCATCTCATTATGTTCTGCCTCAAGTGGAGCAACTAGGGCAGTCACAGACTACCATGTCTCAAAATGCTATTACCTTGCCACCATTTCCTGGTAGGGAGTGTGCTATAGAAGGGAACACCGATCCACAAAACCATCTTTTGTTTGGTTTTAACATAGAGCCCTCATCACATCTAGTTTACAATGAGATGTCTAACCTTAAGAGGGTCAATAGCAACTGTGACTCATCAACTGCACCTTTTCAATCTTCCACCTACTTGAATACCACAGGTGCTGATTCTTCACTGAATCCTGGATTGACACACGGCGTTGGTGAGTCGGGCTTCATGCAAACTCCAGAAAATGGAGGTCAAGGAAACCCACAAAACAAAACCTTTGTGAAGGTTTACAAGTCAGGGTCCTTCGGAAGATCGTTGGATATCACCAAATTCTCCAACTACCCCGAGCTACGCAGCGAGCTTGCTCGTATGTTTGGGCTTGAAGGTGAGTTGGAGGACCCTGTAAGATCAGGCTGGCAGCTTGTATTTGTTGATCAAGAGAATGATGTTCTTCTCCTCGGTGATGGTCCATGGCCGGAATTTGTAAATAGTGTATGGTGCATCAAGATACTTTCCCCTCAGGAAGTGCAGCAAATGGGGACCAATGGTCTAGAGCTTCTGAACTCAGCTCCAACCCAGAGGCTCTCTAATGGTATCTGTGATGACTACACTGGCCGTGAGGACTCAAGAAATTTAAGCACCGGGCTAACAACTGTGGGGTCTTTAGACTACTGA 2745 0.4554 MKLSSAGFSPPPQEGEKRVLDSELWHACAGPLVCLPADGSRVVYFPQGHSEQVAVSTNREVDTYIPNPSLPPQLICQLHNLTMHADTETDEVYAQMTLQPLNPEEQKEAYLPAELGTANKQPTNYFCKILTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPPAQELIARDLHGNDWKFKHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQHMMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFHGLKDDDFGMNSPLLWLRDADRGLQTLNFQGMGVNPWMQARLDPSMMNMQPDMYQAMAAAALQDMRTLDPSKQHPASLLQFQQPQNFSNGNAALMQNQMLQQSQPHQAFPKNQESQHPSQSQAQTQQFQQLLQHQHSFTNQNYHMQQQQQQQQQQQQQQQQQHQQQQQQQSQQQQQVVDHQQMSNAVSTMSQFVSAPPSQSTQPMQAISSIGHQQNFSDSNGNPVSPLHNMLGSFSNDETSHLLNFPRPNSWVPVQSSTARPSKRVAVDPLLSSGASHYVLPQVEQLGQSQTTMSQNAITLPPFPGRECAIEGNTDPQNHLLFGFNIEPSSHLVYNEMSNLKRVNSNCDSSTAPFQSSTYLNTTGADSSLNPGLTHGVGESGFMQTPENGGQGNPQNKTFVKVYKSGSFGRSLDITKFSNYPELRSELARMFGLEGELEDPVRSGWQLVFVDQENDVLLLGDGPWPEFVNSVWCIKILSPQEVQQMGTNGLELLNSAPTQRLSNGICDDYTGREDSRNLSTGLTTVGSLDY* 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2762 914 CDD B3_DNA 125 226 IPR003340 GO:0003677
Mtr8g2762 914 Pfam Auxin response factor 252 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mtr8g2762 914 PANTHER AUXIN RESPONSE FACTOR 543 894 - -
Mtr8g2762 914 PANTHER AUXIN RESPONSE FACTOR 1 545 - -
Mtr8g2762 914 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 543 894 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mtr8g2762 914 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 545 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mtr8g2762 914 SUPERFAMILY DNA-binding pseudobarrel domain 111 255 IPR015300 -
Mtr8g2762 914 Gene3D - 124 227 IPR015300 -
Mtr8g2762 914 Pfam AUX/IAA family 776 866 IPR033389 -
Mtr8g2762 914 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Mtr8g2762 914 MobiDBLite consensus disorder prediction 483 513 - -
Mtr8g2762 914 Gene3D - 777 870 - -
Mtr8g2762 914 Gene3D - 290 362 - -
Mtr8g2762 914 Coils Coil 528 559 - -
Mtr8g2762 914 SMART B3_2 126 228 IPR003340 GO:0003677
Mtr8g2762 914 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Mtr8g2762 914 SUPERFAMILY CAD & PB1 domains 777 856 - -
Mtr8g2762 914 ProSiteProfiles PB1 domain profile. 781 865 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2762 Mtr-Chr8 38276055 38283197 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2762 1 482 B3 DNA Binding Superfamily AT1G30330 84.221 0.0 824
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mtr8g2762 AUX_IAA 1.1e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2762 - - gmx:100777789 1507.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2762 8 38276055 38283197 Mtr8g2762 8 38276055 38283197 ECH
Mtr3g2901 3 42920466 42928168 Mtr8g2762 8 38276055 38283197 PCT