Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2648 ATGGTTGCCCAACAGCCACAACTTCAGATTCAGACTCAGCAACCTACACCTTCTCCTCAAGATGAAGCCTTGAAAAGGAATACCGATTGTGTCTACTTTCTTGCTTCTCCCCTGACATGCAAAAAGGGAAACGAATGTGAGTACCGCCATAGTGAGTATGCTAGAGTCAATCCTAGAGATTGTTGGTATTGGTTGAATGGTAACTGCTTGAATCCCAAGTGTTCATTCCGTCATCCGCCTCTTGACGGGTTGTTAGGAACACCACCGGCAACTGCTGCTACTGCTGGACCATCTGTCCCCGCGCCACAGATTGCGGCAACATCTGCAACCCATGCACCACCTTATAATGCTAGTAAACAAGCTGTGCCTTGCATTTTCTTTCAAAAGGGGTTTTGCTTAAAAGGTGACAGATGTGCCTTCCTGCATGGACCAAACCCTACCAATGGTAGTAAAATAGCTCCACAGGGGTCAATGACGATGACCAACCAAGGAGCTGAGAATCCAAGTTTTAAGAAACCTTTTGGCGGCATTGAAAAACATGCACAAGAAAAGAAAACTTCCCAAGCAAATGTTGCAAGTGTTGAAGCTAAACCTCTCCAAAAATTTGAGACTGCTCCACAGAAAAATATGTTTAAGTTGGGGAAGCATGTACCGCCACCACCTGCAGGGTTTGACAATGAGGCTTCGCGATTTAAGACAAGTAGTTCTCCACCGCCAACCAATGGTTCTAATGCCAGATCTAATCGTGTGCATCAGCCTCGTTTGCCAGATGATCACAGTTTCCATAGTGGTAAGGATAATGACGAGTTTCTCAGAGAGTCATCTCCTGGATTTGATGTTCTTGTAGCCGACGAACTTAGAAATTCTGATTACTATCATGGGGAAGATGAATTTGGTAAAACAAGAGGTCAAGATGAAAGAGGCCCAGACTCTCTGAATGAATATGATGTTGGACATTCTGCTGATTATAGTTTAGCTGCTGATATTGATCGAGATAGATTTCGTGCGCCCCAAGGTTATGACTCATATGATCACATGCAAGAGCCATATGGCTGGGAACCTAGAAAGGGATCAGCCCAAATAGAAAGAAGGACTCATCACAGATCTCGCAGTCCTGACAGTGTTGAGGTCTCAGATCTCCGACATCGTTTATCCAAGCGCAGGAAGGGAAATGGCCTAAAATCTGTCGTCGCTCATGATGAGGAGCAAAGTCATCGATTTTCTCGGAAGGATTCACACCAGTTACCTTCAAATGAGAGATCCGTCAATAATCGTTTCCGAGGCAGAATAAATCTTCCACCAAACGGTGGTGACGGTCACCTAGAGAGGGACTTAGATAGAGGAAGAATCAGCAGTCACCTAGAGAGGGACTTGGACAGAGGAAGAATCAGTGGCCGGTTGTCATCTGGAAGGCTGCAATCACCTCATGAGGGAAGGATCCAGGATAGATTAAGAGGAAGGTTGCCAGATGATGAGAGGAGAAATTTCAGCAGTCGATCGAATGAGGACCGAAGTGGGTTCTCTGCGCCAAAAAGTCTTGCTGAACTTAAGTATGGGAGGAACACTGAGAATAATGACCAACAATCATTTGGAAAGAGGAAAAGCTTGAGGGATCACCAACAATATGAAGATGATGCACCATTTGAAGGTCCAAAACCACTTAGTGAAATTCTGAAGGAGAAGAAAGGAGTTGGAGCTGGTGCAGGCTCCTCCAACAGTAGCAAACATGATGACAATAAGAATGAAGGAATTACCGAAAATGGAACATTGTCAGAGAGCAAGGAAGAAGAGTCCAAGATTCAGGCTGCTGATGGAGTTGAGAATACTGATGTAACTCACGGTCAATCGTCCGAGGAAGGAATGATATACGATGAAGCTGCCGAAGATCAGGAGTATGAAGGTGAAGGAGATTATGAATATGAGCAAGGTGATGAGGAGTATGAGTATGAACAAGTTGAGGGCGAAAATCAAGAGCAAGAATATATGGAAGATGAAGATGGGGATGACTTTGCCAAGAAGATTGGTGTTGTTCTTTCATAA 2040 0.4461 MVAQQPQLQIQTQQPTPSPQDEALKRNTDCVYFLASPLTCKKGNECEYRHSEYARVNPRDCWYWLNGNCLNPKCSFRHPPLDGLLGTPPATAATAGPSVPAPQIAATSATHAPPYNASKQAVPCIFFQKGFCLKGDRCAFLHGPNPTNGSKIAPQGSMTMTNQGAENPSFKKPFGGIEKHAQEKKTSQANVASVEAKPLQKFETAPQKNMFKLGKHVPPPPAGFDNEASRFKTSSSPPPTNGSNARSNRVHQPRLPDDHSFHSGKDNDEFLRESSPGFDVLVADELRNSDYYHGEDEFGKTRGQDERGPDSLNEYDVGHSADYSLAADIDRDRFRAPQGYDSYDHMQEPYGWEPRKGSAQIERRTHHRSRSPDSVEVSDLRHRLSKRRKGNGLKSVVAHDEEQSHRFSRKDSHQLPSNERSVNNRFRGRINLPPNGGDGHLERDLDRGRISSHLERDLDRGRISGRLSSGRLQSPHEGRIQDRLRGRLPDDERRNFSSRSNEDRSGFSAPKSLAELKYGRNTENNDQQSFGKRKSLRDHQQYEDDAPFEGPKPLSEILKEKKGVGAGAGSSNSSKHDDNKNEGITENGTLSESKEEESKIQAADGVENTDVTHGQSSEEGMIYDEAAEDQEYEGEGDYEYEQGDEEYEYEQVEGENQEQEYMEDEDGDDFAKKIGVVLS* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2648 679 MobiDBLite consensus disorder prediction 461 624 - -
Mtr8g2648 679 MobiDBLite consensus disorder prediction 393 416 - -
Mtr8g2648 679 SMART c3hfinal6 57 80 IPR000571 GO:0046872
Mtr8g2648 679 SMART c3hfinal6 118 144 IPR000571 GO:0046872
Mtr8g2648 679 SMART c3hfinal6 25 52 IPR000571 GO:0046872
Mtr8g2648 679 ProSiteProfiles Zinc finger C3H1-type profile. 118 145 IPR000571 GO:0046872
Mtr8g2648 679 Pfam Zinc-finger containing family 25 79 IPR041686 -
Mtr8g2648 679 MobiDBLite consensus disorder prediction 357 383 - -
Mtr8g2648 679 MobiDBLite consensus disorder prediction 575 603 - -
Mtr8g2648 679 Gene3D - 109 185 - -
Mtr8g2648 679 Gene3D - 16 81 - -
Mtr8g2648 679 MobiDBLite consensus disorder prediction 530 559 - -
Mtr8g2648 679 MobiDBLite consensus disorder prediction 228 250 - -
Mtr8g2648 679 ProSiteProfiles Zinc finger C3H1-type profile. 55 81 IPR000571 GO:0046872
Mtr8g2648 679 MobiDBLite consensus disorder prediction 251 272 - -
Mtr8g2648 679 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 122 144 IPR000571 GO:0046872
Mtr8g2648 679 SUPERFAMILY CCCH zinc finger 119 143 IPR036855 GO:0046872
Mtr8g2648 679 MobiDBLite consensus disorder prediction 292 316 - -
Mtr8g2648 679 MobiDBLite consensus disorder prediction 1 22 - -
Mtr8g2648 679 ProSiteProfiles Zinc finger C3H1-type profile. 24 53 IPR000571 GO:0046872
Mtr8g2648 679 Coils Coil 177 197 - -
Mtr8g2648 679 MobiDBLite consensus disorder prediction 336 448 - -
Mtr8g2648 679 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 11 679 - -
Mtr8g2648 679 MobiDBLite consensus disorder prediction 292 313 - -
Mtr8g2648 679 PANTHER ZINC FINGER CCCH-TYPE-CONTAINING 11A 11 679 - -
Mtr8g2648 679 MobiDBLite consensus disorder prediction 180 272 - -
Mtr8g2648 679 MobiDBLite consensus disorder prediction 476 500 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mtr8g2648 zf-CCCH_3 6.4e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2648 - - gmx:102669253 783.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2648 8 37139085 37142818 Mtr8g2648 8 37139085 37142818 ECH