Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2633 ATGGAGCAACGAAAGCTTGTGGTTTTGGGTATCCCATGGCATGTTGATACTGATGGATTGAAAGAATATATGAGCAAATTTGGTGAGCTAGAAGATTGTATTGTTATGAAGGAACGGTCAACTGGCCGATCTCGCGGTTTTGGATATGTGACATTCGCATCGGTGGATGATGCTAAGAATGTGCTATCCAGTGAACACAGTCTTGGTGACAGGACGCTGGAAGTCAAAGTGGCCACACCAAAGGAGGAGATGAGGGCACCAGTCAAAAAGGTTACCAGAATCTTTGTGGCCAGGATTGCTCCATCAGTAACAGAAGAAACTTTTAGGAGTCATTTTGAGAAATACGGTGATATAACAGATTTATATATGCCAAAGGATCGTGGATCAAAAACACATCGAGGAATTGGTTTTATCACTTTCGCAACTGCAGATTCTGTGGAGAACTTGATGAAAGAAACCCATGAACTGGGGGGTTCTGATGTGGTGGTTGATCGAGCAACACCTAAGGAAGATGATTTCAAGCCAATTGGCAGAACCAGAACACCACAATTAGGATATAGTGCATATAGTACTTATATTCCTGCATCAACTAGATATGCAGCACTTGGCGCTCCAACTATGTATGATCGTCCAAGTTCTATTTATGGAAGGGGAGAACCTGCCCGTGGGATAAGCAAAAAGATTTTTGTTGGTCGTCTTCCCCCGGAGGCAACCACTGAAGATCTTCGCCTGTATTTTGGAAGATTTGGCCATATCTTAGATGTTTATATTCCTAGGGATGTCAAGAGACCTGGTCATAGAGGTTTTGGTTTTGTGACTTTTGCGGACAGCGGTGTTGCAGATCGTGTCTCTCGAAGACCTCATGAGATTTGTGGACAGGAGGTTGCCATAGATTCAGCCGCACCTCTTGATGAAGCAGGTCCCAGTGGGAATACTATGTTGAATAGCATGGATTCTTTCAGGGGATATGGCGGTCCAGTGAGGCCTTATTTTGATGAAAGTCCTGTGAGGTCTTATGGGAGAATGTACAATAGCCTGGACTTCGATGATTTGGGTTATGGAGTTGCTAGTAGAAGACCATCAAGAACAACAGATTGGAGGTATAGACCATACTAG 1116 0.4391 MEQRKLVVLGIPWHVDTDGLKEYMSKFGELEDCIVMKERSTGRSRGFGYVTFASVDDAKNVLSSEHSLGDRTLEVKVATPKEEMRAPVKKVTRIFVARIAPSVTEETFRSHFEKYGDITDLYMPKDRGSKTHRGIGFITFATADSVENLMKETHELGGSDVVVDRATPKEDDFKPIGRTRTPQLGYSAYSTYIPASTRYAALGAPTMYDRPSSIYGRGEPARGISKKIFVGRLPPEATTEDLRLYFGRFGHILDVYIPRDVKRPGHRGFGFVTFADSGVADRVSRRPHEICGQEVAIDSAAPLDEAGPSGNTMLNSMDSFRGYGGPVRPYFDESPVRSYGRMYNSLDFDDLGYGVASRRPSRTTDWRYRPY* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2633 371 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 226 302 IPR000504 GO:0003723
Mtr8g2633 371 SMART rrm1_1 227 298 IPR000504 GO:0003723
Mtr8g2633 371 SMART rrm1_1 5 76 IPR000504 GO:0003723
Mtr8g2633 371 SMART rrm1_1 93 164 IPR000504 GO:0003723
Mtr8g2633 371 Gene3D - 224 306 IPR012677 -
Mtr8g2633 371 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 168 IPR000504 GO:0003723
Mtr8g2633 371 SUPERFAMILY RNA-binding domain, RBD 225 325 IPR035979 GO:0003676
Mtr8g2633 371 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 228 282 IPR000504 GO:0003723
Mtr8g2633 371 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 153 IPR000504 GO:0003723
Mtr8g2633 371 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 72 IPR000504 GO:0003723
Mtr8g2633 371 PANTHER OS01G0945800 PROTEIN 3 371 - -
Mtr8g2633 371 SUPERFAMILY RNA-binding domain, RBD 89 181 IPR035979 GO:0003676
Mtr8g2633 371 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 3 371 - -
Mtr8g2633 371 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Mtr8g2633 371 Gene3D - 88 175 IPR012677 -
Mtr8g2633 371 Gene3D - 1 87 IPR012677 -
Mtr8g2633 371 SUPERFAMILY RNA-binding domain, RBD 3 85 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2633 Mtr-Chr8 36960134 36966609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2633 6 285 Eukaryotic Initiation Factors Gene Family AT3G16380 22.727 2.73e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2633 K14411 - gmx:100795240 600.897