Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2629 ATGTCTAAGAAGTTGGCAGCAGCACCATTTTTGACCAAGACCTATGAGATGATTGAAGATCCTCTCACTAATGATGTGATTTCCTGGGGTGAAAGTGGTAACACTTTTGTTGTATTGAAACAACTTGAATTTTCAAGGGATTTGCTTCCTAAATTTTTCAAGCATAACAATTTCTCAAGCTTTGTTCGTCAACTCAACACCTATGGGTTTAGGAAGACTGTTTCGGAAAAATGGGAATTCGCCCAAGAGAATTTTAAGAAAGGAGAGATCGAGCTGCTTCCGACAATCAAGCGTCGGAAGACCCAGTCCCCAGCAGTGGTAAGATCTGTTGGAGTTGGCAAGAACTCACCTTCGAGCTCTGCTGCCGAAGACATGGGGTCAACTTCAACAGGATCAGTGGACCGATCAGACTTATCCATTGAGAACAAAAGACTCAAAATGGATAACGAGAAGTTAACCGTTGAACTGACACTTGTAAAGAAAAAGTGCGAAGAATTGCTTGCTTATCTTCAGAGCAATCTCAACATCGGGGCTGATGAAATTAACCGGATCCTTGGCAAAGGAACAGATGGGTCCAGCCATGATACGGATAATGATGATGACAATATGGTACGTGAATGTGGGAAGGGTTTGAAACTGTTTGGGGTTTGGCTGAAGGGAGAAGAGGGGAAAGACAAGGTGGAGATGGACACTGCCAAGGGTAGCTGCCACAAGAGAGGGCGTGAAGACCCAATTGATGGTGCCAACAATGAGTTCAATGCCGTTGTCTAG 771 0.4423 MSKKLAAAPFLTKTYEMIEDPLTNDVISWGESGNTFVVLKQLEFSRDLLPKFFKHNNFSSFVRQLNTYGFRKTVSEKWEFAQENFKKGEIELLPTIKRRKTQSPAVVRSVGVGKNSPSSSAAEDMGSTSTGSVDRSDLSIENKRLKMDNEKLTVELTLVKKKCEELLAYLQSNLNIGADEINRILGKGTDGSSHDTDNDDDNMVRECGKGLKLFGVWLKGEEGKDKVEMDTAKGSCHKRGREDPIDGANNEFNAVV* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2629 256 Coils Coil 135 162 - -
Mtr8g2629 256 MobiDBLite consensus disorder prediction 108 136 - -
Mtr8g2629 256 SUPERFAMILY "Winged helix" DNA-binding domain 8 99 IPR036390 -
Mtr8g2629 256 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr8g2629 256 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr8g2629 256 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr8g2629 256 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr8g2629 256 Gene3D - 2 101 IPR036388 -
Mtr8g2629 256 MobiDBLite consensus disorder prediction 104 136 - -
Mtr8g2629 256 MobiDBLite consensus disorder prediction 233 256 - -
Mtr8g2629 256 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr8g2629 256 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-1 3 233 - -
Mtr8g2629 256 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 3 233 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2629 Mtr-Chr8 36911909 36916036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2629 2 224 HSF AT4G36990 42.798 5.20e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Mtr8g2629 HSF_DNA-bind 1.4e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2629 K09419 - gmx:100801638 254.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0656 5 6393016 6395597 Mtr8g2629 8 36911909 36916036 PCT