Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2628 ATGGCTGTTCCAAATTCTGTTTCTGATGATAATGTTGGAACGTTATTGTTACCTGATAAGGAACAAGAAAATTCTATCATAGTATCCACCCTCATTCACGTTCTCTCCTCCTCAAATAATGTTGCTGTTCCTGTTTCTCATACGGGTACCGATACTCAACAAAACTTCGAGGTATTAAACAATTTACCTCATAACAACCAACAATACAAGGAAAAGGAATCAGATAAAACAGCCACGTCATCAAGTGCAAGTGGGACCCTCTTGTCTTACCAAAACCAATATGATCCTGACACGTGTCGCGTATGCAAAATCAACGGCTGTCTCGGTTGCAGATTATTCTTTGAGAAAGATAAAGGGGAGAATAAGAAGAAATACAGAGGAGTGAGGCAGAGAGCATGGGGAAAATGGGTGGCAGAGATAAGAGACCCAAAAAGAGCAACTCGTGTATGGCTTGGTACTTTTCAAACAGCTGAGAATGCTGCAAGAGCTTATGATCAAGCTGCTATTAAGTTTCATGGTGCTAGAGCTAAGATTAATTTTGATTTCTCTGATTATGAAGTTGCTTGTGATGATAAGAAGAAGCAAAGTGTGACAGTGCAGGATTGTGTTGGTGAGGTCTCAGGAGTGAAGAACCAAACAAAAACTACTATCCTATCATTCGGGCCGCCAGAAGTGAACTAG 681 0.4068 MAVPNSVSDDNVGTLLLPDKEQENSIIVSTLIHVLSSSNNVAVPVSHTGTDTQQNFEVLNNLPHNNQQYKEKESDKTATSSSASGTLLSYQNQYDPDTCRVCKINGCLGCRLFFEKDKGENKKKYRGVRQRAWGKWVAEIRDPKRATRVWLGTFQTAENAARAYDQAAIKFHGARAKINFDFSDYEVACDDKKKQSVTVQDCVGEVSGVKNQTKTTILSFGPPEVN* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2628 226 ProSiteProfiles AP2/ERF domain profile. 124 181 IPR001471 GO:0003700|GO:0006355
Mtr8g2628 226 SMART rav1_2 124 187 IPR001471 GO:0003700|GO:0006355
Mtr8g2628 226 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF109 20 196 - -
Mtr8g2628 226 SUPERFAMILY DNA-binding domain 124 182 IPR016177 GO:0003677
Mtr8g2628 226 CDD AP2 123 181 IPR001471 GO:0003700|GO:0006355
Mtr8g2628 226 Gene3D AP2/ERF domain 123 182 IPR036955 GO:0003700|GO:0006355
Mtr8g2628 226 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 20 196 - -
Mtr8g2628 226 PRINTS Ethylene responsive element binding protein signature 125 136 IPR001471 GO:0003700|GO:0006355
Mtr8g2628 226 PRINTS Ethylene responsive element binding protein signature 147 163 IPR001471 GO:0003700|GO:0006355
Mtr8g2628 226 Pfam AP2 domain 124 173 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2628 Mtr-Chr8 36900881 36902278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2628 21 191 AP2-EREBP Transcription Factor Family AT4G34410 40.930 5.69e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr8g2628 AP2 5.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2628 - - cam:101497463 219.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2628 8 36900881 36902278 Mtr8g2628 8 36900881 36902278 ECH