Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2600 ATGGCAAGAGAGATTATTCGCCCGTGCGCAGCATGCAAGCATCTCCGTCAGGAGTGCGACTCAAGCTGTGACCTTGCTCCTTACTTTCCACCTGACAACCCAGAGCGTTTCATCAAGGTACACTCTGTGTTTGGAAAGAACAATGTGTCGAATATGTTGAAAAAAGTTGATGCTTCACATCACGAACAAGCTATTGAATCATTCGTGTATGAGGCTGAGGCCAGGTTGAGGGACCCAGTCTATGGTTGTGCGGGTCCAGCAAAGGACCTTCAACGTAGGTTGAATGAAGTTCAAATGGAACTAAAGAGTGTGAAGAACGAACTGGCCAAATACCTCAATCCTCAGATTGTTGAATTTGTTCTCGGCTTTCCTGATTGTTTCGGCTTTAAGCCAAATGCATCTGCACCGACTATGACAATCGGTGCAGGACAATTGGCTTTTAATCAGCTGCCAGCTGCTGAGTTGACGACTCAGCAGATTCACAACTTAGAAGTGTTAAAACAAAATCTTCTTAGTGGCCCCGATGGTGATGATGGGTTGGCAGGATTCCATATGGATGTTAATGTTCCTGTTGAAAATGGTGGCATTAATACTAGCTCCCACCCTGTTGGTGGTGGTTCTGTCAATGGTAGCGGTGGCTCGACAAGATTCCAGATGGGTGCTGATATTCTTGTTCGTGATTCTGGGTTGGCAGGATCCCATATGCTTCCTGATGTTCCTCCTGCTGATGCTCCTTCTGCGCTTCCTTCTTCTAGGGCTGATACTATCGACAATGGTGGCACTAGCAACCAGTAA 795 0.4667 MAREIIRPCAACKHLRQECDSSCDLAPYFPPDNPERFIKVHSVFGKNNVSNMLKKVDASHHEQAIESFVYEAEARLRDPVYGCAGPAKDLQRRLNEVQMELKSVKNELAKYLNPQIVEFVLGFPDCFGFKPNASAPTMTIGAGQLAFNQLPAAELTTQQIHNLEVLKQNLLSGPDGDDGLAGFHMDVNVPVENGGINTSSHPVGGGSVNGSGGSTRFQMGADILVRDSGLAGSHMLPDVPPADAPSALPSSRADTIDNGGTSNQ* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2600 264 PANTHER LOB DOMAIN-CONTAINING PROTEIN 32-RELATED 6 148 - -
Mtr8g2600 264 Coils Coil 87 107 - -
Mtr8g2600 264 MobiDBLite consensus disorder prediction 232 264 - -
Mtr8g2600 264 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Mtr8g2600 264 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 148 - -
Mtr8g2600 264 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2600 Mtr-Chr8 36539951 36541116 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2600 8 162 AS2 family AT5G66870 43.312 1.33e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mtr8g2600 LOB 3.3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2600 - - mtr:MTR_8g079660 512.686