Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2599 ATGGATAGAGAGATTATTCGCCCATGTGCAGCTTGCAAGCATCTCCATAGGAAGTGCCACCTTACCTGTGTCTTAGCTCCTTACTTTCCAAAGGACAACCCGGAGCGTTTCATCAAGGTACACTCGGTGTTTGGAATGAGAAATGTGACTAATCTGTTGAAAAAATTGGATGTTTCACATCATGAACAAGCTGTTGAATCCTTGGTGTATGAAGCTGATGCCTGGTTGAGGGACCCTATCCATGGCTGTGCGGGTCCAGCAAATGACCTTCAAGGTAGGTTGAATGAAGCTCAAACGGAGCTCAAGAGTGTGAAGAACGAACTGGCCAAATACCTCGGTCCTCAGGTCGTTGAATCTGTTCTCGCCTTTCCTGATTGTTTCGGCTTTAAGCCAAATGCTTCTCCATTGACTATGACAGTTGGTGGAGGACAATTGGGTTTTAATCAGCTGCCAGCTGCTGAGTTAACGGCTCAGCAGCTTCACAACCTAGAAGTTCTAAAACAAAAGCTTCTTAGTGGCCCCGATGGTGATGATGGGTTGGCAGGATTCCAGATGGGTGCTGATGTTGATGTTCCTGTTCGTGATTCTGGGTTGGCAGGATCCCAGATGCTTCCTCATGTTCCTCCTGTTGATGCTCCTTCTAGGGCTGATACTTTTGACAATGGTAGCACTAGCACAAGCAACCAGGTTCGATTGCCGGGTAGCCGCAACGTTTGA 717 0.4756 MDREIIRPCAACKHLHRKCHLTCVLAPYFPKDNPERFIKVHSVFGMRNVTNLLKKLDVSHHEQAVESLVYEADAWLRDPIHGCAGPANDLQGRLNEAQTELKSVKNELAKYLGPQVVESVLAFPDCFGFKPNASPLTMTVGGGQLGFNQLPAAELTAQQLHNLEVLKQKLLSGPDGDDGLAGFQMGADVDVPVRDSGLAGSQMLPHVPPVDAPSRADTFDNGSTSTSNQVRLPGSRNV* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2599 238 Coils Coil 87 107 - -
Mtr8g2599 238 PANTHER LOB DOMAIN-CONTAINING PROTEIN 32-RELATED 6 148 - -
Mtr8g2599 238 MobiDBLite consensus disorder prediction 217 238 - -
Mtr8g2599 238 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Mtr8g2599 238 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Mtr8g2599 238 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 148 - -
Mtr8g2599 238 MobiDBLite consensus disorder prediction 194 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2599 Mtr-Chr8 36529769 36530485 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2599 8 121 AS2 family AT5G66870 52.632 3.62e-36 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mtr8g2599 LOB 4.6e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2599 - - mtr:MTR_8g079660 345.895