Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2598 ATGGCAGAAGAGATTATTCGCCCGTGTGCAGCGTGCAAGCATCATCGTCGAAGGTGTGACGAAGCAAGCTGCAACCTAGCTCCTTACTTTCCAGCGGACAATCCGCAACGTTACAACCTTGTACATTCTGTGTTTGGAAGGAGCAAAGTGTCCAAAATATTGCAAGAACAAGACATTTCCCATCGCAAACAAGTCGCTGATTCTTTGGTGTATCAGGCTGAGGCGCGTTTGAGGGACAATGTTTATGGCGTTGTTGGTCCTGCATCCTTTCTTGAAAAGACGTTGAAGGATGTTCAAGATGAACTCAAGAAGGTGAAGAATGAACTGATTAAATACCTTGATCCTGAAATCATTCAAGAGGTTCTGTCCAATCCTGATCGTTTCGGCTTTGCACCAAGCCCTAATCAAAATCCACAAGGACATCTTGTTTCTCAGCAGCCGCCAACTTTAGATCAGTTGACGACTTCTCAGATCATTCACTTACTGCAATTGAAAGAAAATATTGTTAGGTCCGACACCGGGATCAACTCTAGTGGTGGTGGTGGTGGAGAAGGACAACATATTGGTGCTCCTGCTGCTGATGCTGTCATTGCTCCTTCTTTTGACAATGGCAGCACTAGCAGTTGCCAGATTCAATTGCAGGGGGAACAACAACAAGTTCAGCAACAACCTGATCAACAAGAATAG 687 0.4512 MAEEIIRPCAACKHHRRRCDEASCNLAPYFPADNPQRYNLVHSVFGRSKVSKILQEQDISHRKQVADSLVYQAEARLRDNVYGVVGPASFLEKTLKDVQDELKKVKNELIKYLDPEIIQEVLSNPDRFGFAPSPNQNPQGHLVSQQPPTLDQLTTSQIIHLLQLKENIVRSDTGINSSGGGGGEGQHIGAPAADAVIAPSFDNGSTSSCQIQLQGEQQQVQQQPDQQE* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2598 228 MobiDBLite consensus disorder prediction 127 147 - -
Mtr8g2598 228 MobiDBLite consensus disorder prediction 129 147 - -
Mtr8g2598 228 MobiDBLite consensus disorder prediction 173 228 - -
Mtr8g2598 228 Coils Coil 88 108 - -
Mtr8g2598 228 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 223 - -
Mtr8g2598 228 ProSiteProfiles LOB domain profile. 7 109 IPR004883 -
Mtr8g2598 228 MobiDBLite consensus disorder prediction 200 228 - -
Mtr8g2598 228 Pfam Lateral organ boundaries (LOB) domain 8 106 IPR004883 -
Mtr8g2598 228 PANTHER LOB DOMAIN-CONTAINING PROTEIN 32-RELATED 6 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2598 Mtr-Chr8 36518882 36519568 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2598 8 118 AS2 family AT2G23660 49.550 2.38e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mtr8g2598 LOB 6.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2598 - - mtr:MTR_8g079580 413.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2598 8 36518882 36519568 Mtr5g0680 5 6656864 6660568 PCT