Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2578 ATGACAAAGCTCAATGTCATTGAACTTGAGGCTGGAGGGTTCAAGATCCAATGTACTTTGTTTGGAAGTTATGTAGATGATCTCAACAGCTTTATAGCAAGTGGAGATATCCCAAATGCGATTGTGATCATCCAACTTGCCAAAGCAAAAAGCTTCCAAGATAAAATACATGTTCAGAACTGTATTGGTTGCACCAAAGTTATTTTCAAGCCTACATGTGATGCTGCTGTTAGCATGAGGAATAGGCTGAGTGAGACTGTTGATACCCCATCCCCACTTGGTTTAACCCAGCTGCAACCAGAAGCAAAACTTGACCCTAGAGAAGAGTTTTTGTATGGAACACCCAGGAACACTATGCAGGGGCTCAAAGATGCTACCACAAATGAAGTTTATGTTGTGCTTGGAACCATTAAGAGAATAGTTAATAGGGAAAATTTTTGGTATACTGCATGTATATGCTCTAAGGCTGTCATCCCTGATTCTCAAATGTTCTATTGTGAGAAGTGTGATAGGCATGTGAAGAAAGTATTCTCTAGGTACTGTTTGAGGGTGAGAGCAATTGATCATACAGATTGTGCTACCTTAGTAATTTTTGACAAAGAAGCAACTGCACTTTTTAACAAGAGCTGTGTTGACATGCTAGCTGAACATGGAGTGGCTGTTTCTGAAGGTCATCTACCACCTGAAATTGCTGGAATCATTGGCAAAACTTTCCTCTTCAAGGTAGAGACCAAAGTTGATCAAAACCCCAGATTTGAGCAATCATTCAGGGTGAGGAAGATTTGTGCCATGCCGGATGTTATCAATGAGTTCAAGAAGAAATGGGGTGAAGAAGAAGCTGCCTTCTTCAAAAACGCCATGGAAGCATCTTCCTTAAGTGTTTTGTTGGACAAGGGGAAAGCTCCCATGATTGCTGGCTCTTCTGATGTGTTGAATCAAGATGATTTTTCATTGACTGAACCTGTTGAGAAGTGCAAGGAAATGCTGTTGGGGGAGGGTTCTGGCATTGTCACACAGGATCTTCTGCCTAAGTTTGCAGTTGCAGATTGTGAGTTTGATGTGGTTGAGATAAGTCAGAAAGGTTCTGCTGCATCTAGCAAGAGGGGATCTCCCACTACGGATGATGATGAGATGAACATGTCTCTCAAGATGTTGAGGAAAACTATCAAGATTGAAAAGCCTTAA 1185 0.4143 MTKLNVIELEAGGFKIQCTLFGSYVDDLNSFIASGDIPNAIVIIQLAKAKSFQDKIHVQNCIGCTKVIFKPTCDAAVSMRNRLSETVDTPSPLGLTQLQPEAKLDPREEFLYGTPRNTMQGLKDATTNEVYVVLGTIKRIVNRENFWYTACICSKAVIPDSQMFYCEKCDRHVKKVFSRYCLRVRAIDHTDCATLVIFDKEATALFNKSCVDMLAEHGVAVSEGHLPPEIAGIIGKTFLFKVETKVDQNPRFEQSFRVRKICAMPDVINEFKKKWGEEEAAFFKNAMEASSLSVLLDKGKAPMIAGSSDVLNQDDFSLTEPVEKCKEMLLGEGSGIVTQDLLPKFAVADCEFDVVEISQKGSAASSKRGSPTTDDDEMNMSLKMLRKTIKIEKP* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2578 394 CDD RPA1_DBD_C 130 247 IPR013955 -
Mtr8g2578 394 Pfam Replication factor-A C terminal domain 134 248 IPR013955 -
Mtr8g2578 394 PANTHER REPLICATION FACTOR A 1, RFA1 2 216 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mtr8g2578 394 Gene3D - 1 89 IPR012340 -
Mtr8g2578 394 Gene3D - 113 271 IPR012340 -
Mtr8g2578 394 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 2 216 - -
Mtr8g2578 394 SUPERFAMILY Nucleic acid-binding proteins 126 262 IPR012340 -
Mtr8g2578 394 MobiDBLite consensus disorder prediction 361 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2578 Mtr-Chr8 36248946 36252312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2578 13 213 Core DNA Replication Machinery Family AT4G19130 22.018 4.15e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2578 - - mtr:MTR_4g036240 402.134