Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2577 ATGATTTTACAGATGCAAATCTTCGTGAAAACCCTCACTGGAAAGACCATCACTCTCGAGGTTGAGAGTTCCGACACCATCGACAACGTTAAGGCTAAGATCCAGGACAAGGAAGGAATTCCCCCGGACCAGCAAAACATCATCTTCGCCGGAAAGCAACTCGAGGACGGTCGTACCCTAGCTGACTACAACATCCAGAAGGAAAGCACCCTTCACCTTGTCCTCTGTCTACGTGGTGGCATGCAGATCTTCGTTAAGACCCTCACCGGCAAGACCACCACCCTTGAGGTCGAAAGCTCCGACACCATCGACAACGTCAAAGCCAAGATCCAGGATAAGGAAGGAATTCCCCTGGACCAGCAGAGGTTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTTGCTGATTACAACATCCAGAAGGAGTCTACCCTTCATCTTGTCCTCCGTCTACGTGGTGGTATGCAGATCTTTATCAAGACCCTTACCGGAAAGACCATCCCCCTTGAGGTGTAAAGCTCTGACACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCACATAGACCAGCAGAGGCTTATCTTCGCCGGAAAGCAGTTGGAAGACGAAAGAACCCTAGCTGATTACAACATTCAGAAGGAAAGCACTCTTCACCTTGTGTTACAATCTCCCCCTATAAATACACCTCTAAACTTCCTCATTTCCTCACACCAACTCACATTCTCACTCTCCTCCTGA 756 0.496 MILQMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQNIIFAGKQLEDGRTLADYNIQKESTLHLVLCLRGGMQIFVKTLTGKTTTLEVESSDTIDNVKAKIQDKEGIPLDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFIKTLTGKTIPLEV*SSDTIDNVKAKIQDKEGIHIDQQRLIFAGKQLEDERTLADYNIQKESTLHLVLQSPPINTPLNFLISSHQLTFSLSS* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2577 250 PANTHER UBIQUITIN 69 227 - -
Mtr8g2577 250 SUPERFAMILY Ubiquitin-like 156 229 IPR029071 -
Mtr8g2577 250 ProSitePatterns Ubiquitin domain signature. 31 56 IPR019954 -
Mtr8g2577 250 PRINTS Ubiquitin signature 112 132 IPR019956 -
Mtr8g2577 250 PRINTS Ubiquitin signature 91 111 IPR019956 -
Mtr8g2577 250 PRINTS Ubiquitin signature 133 154 IPR019956 -
Mtr8g2577 250 PANTHER UBIQUITIN 5 173 - -
Mtr8g2577 250 SMART ubq_7 5 76 IPR000626 GO:0005515
Mtr8g2577 250 SMART ubq_7 81 152 IPR000626 GO:0005515
Mtr8g2577 250 SMART ubq_7 157 227 IPR000626 GO:0005515
Mtr8g2577 250 ProSitePatterns Ubiquitin domain signature. 107 132 IPR019954 -
Mtr8g2577 250 ProSiteProfiles Ubiquitin domain profile. 157 227 IPR000626 GO:0005515
Mtr8g2577 250 ProSiteProfiles Ubiquitin domain profile. 81 156 IPR000626 GO:0005515
Mtr8g2577 250 SUPERFAMILY Ubiquitin-like 5 80 IPR029071 -
Mtr8g2577 250 CDD Ubl_ubiquitin 5 80 - -
Mtr8g2577 250 PANTHER - 5 173 - -
Mtr8g2577 250 PANTHER - 69 227 - -
Mtr8g2577 250 Pfam Ubiquitin family 159 227 IPR000626 GO:0005515
Mtr8g2577 250 Pfam Ubiquitin family 83 154 IPR000626 GO:0005515
Mtr8g2577 250 Pfam Ubiquitin family 7 75 IPR000626 GO:0005515
Mtr8g2577 250 SUPERFAMILY Ubiquitin-like 79 156 IPR029071 -
Mtr8g2577 250 Gene3D - 81 156 - -
Mtr8g2577 250 Gene3D - 3 80 - -
Mtr8g2577 250 Gene3D - 157 233 - -
Mtr8g2577 250 ProSiteProfiles Ubiquitin domain profile. 5 80 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2577 Mtr-Chr8 36245198 36247764 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2577 5 81 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 94.805 1.61e-46 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2577 - K08770 tua:125520881 404.445