Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2564 ATGGAACCAATTCTCATTAAGATCGCTGCTGGGAGTGATGTTGTGGAAACACTCATCAACTTGGCTCGGCGTCGTGAAGCTGGAATCGTTATTTTGAGTGGTTCCGGTATTGTCACTGATGTTACACTTCACAAACTCGAGTCTGATTCCCTTGATGTCATCGAAGGATTGTCCAATATGACATCACTATCTGGATACTTCATTGTTGAGGGTGGTTTCGTACCTCCCCTGACCATGAACATTGTCTCGCCATTATCCTCTTTCTCCATTTGCCTCTTCGACAATCGTGGACAAGTGTTTGGAGGGAAAATTGGTGGAAAGGTTATGGCTGCTGGTGCTGTTTTGGTTACAGCCGCTTTTATTCTGAACCCAACATTTCATAGGTTTGGTGTAGTCAATGGAAGGGTACAAGAAATGGAAAATGATGACCCAGAAGATGTTGGTGGTGTTGTCGTCAATGATGATGATGGTCATGCACCATAA 483 0.441 MEPILIKIAAGSDVVETLINLARRREAGIVILSGSGIVTDVTLHKLESDSLDVIEGLSNMTSLSGYFIVEGGFVPPLTMNIVSPLSSFSICLFDNRGQVFGGKIGGKVMAAGAVLVTAAFILNPTFHRFGVVNGRVQEMENDDPEDVGGVVVNDDDGHAP* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2564 160 CDD DUF296 3 120 IPR005175 -
Mtr8g2564 160 Pfam Plants and Prokaryotes Conserved (PCC) domain 3 119 IPR005175 -
Mtr8g2564 160 Gene3D - 3 139 - -
Mtr8g2564 160 ProSiteProfiles PPC domain profile profile. 1 142 IPR005175 -
Mtr8g2564 160 SUPERFAMILY AF0104/ALDC/Ptd012-like 1 129 - -
Mtr8g2564 160 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 152 IPR014476 GO:0003680
Mtr8g2564 160 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 152 - -
Mtr8g2564 160 MobiDBLite consensus disorder prediction 139 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2564 Mtr-Chr8 36107489 36107971 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2564 1 129 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 33.835 9.50e-20 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2564 - - mtr:MTR_8g078930 291.582