Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2556 ATGGTTATGTTTCCATGTGTTCAAAATACACATTTTGAAGAACTCCTTTGTGTTGAAAATCGTCAAGAAGACATACTGAGTGACGATTCGTTACAAGACATTGTTGGTGAAGATTCATCTAGTGAAGACCAAATGAATCCGTCTGGCCATAAAAGATTCGAACAAATCACCGCGGATAAGTTTCAAGGCGAAACATCACAAAACAACAGAGATGAAGTAGATGAACCTGTGGCTGTGTGGTTCAAGTGGGAAGGGAAGTGGAATGCAGGCATCAAATGTGCAATGGCTGATTGGCCATTATCAATTGTGAAAGCCAAACCAACTCATGTTGATGAACAAAGCAAATGTTTCGTCATTTTTTCTCCGGAAACAAGGAGTTTTTCATGGGTTGATATGCTTCTTGTTCAATCAATTGATAAGTTTCCTCAACCTATAGCATATAAAACTTATCAAGAAGGATTGCAAATGGTACAAGACTTGGGGATTGCGCGACAATTTATAATGCAAAAGCTCGCTGTCGAAATGCTCTACATGGTTGATCAGCTTCATCTTAATGCTTTGAAAGAAGATTATCGTAATGCGATGGTTTGGAAGCAATTTGCTATGGAAGCTTCTCGTTGTCAACATTATTCAGATCTTGGAAGAATGGTTCAGAGGTTGCAAAAGAGTATAATGCAACAATATATAAAAGACAATTGGAAAGTGCATTCCTCTGAGTCTTGGGATGAAAGATGCCAGAGTTCAAACAGTGCTGAAATAATAGAGCAGCTTCAGGAGGAATTGTTTGATTCTATTTTGTGGAATGATGTCCACACTCTCCGCGATGCACCGACACAACAAAAATTAGATTTTGAGCGGAAAACAGGGAACCATGATGTAATGAAATGGTTTTCCACATTTATTTCCTTTTCTAGCAACAGTAGCACACATCAACATTCTTTTAGTAATGATGGTTTGCACCAAGCAAGTCTTCAAGATGGTAGCAAAAGGCCTAAACTTAATGTTCGCCGCGCAAATACATTTTCTAGACAAGAAGGAATTGTGGAGGTACCTGTGGAAACTGCGCTTCCTAGTCAATTGATCAGTCCATTGAGTAAAGTCGCAGTTCATCCTGTAGATTCTGAGATGATGTTTAATAATGGGACAATATCAAGGTATGTGAATGAAATGGATATTCAAATATCTGTAGAACCTGATACAAAGGATGATGCTGAGTATCGACGATGCCAAGCATACATTGAAGCCAAGGGGAGGCAATGTGTGAGAATGGCAATTGGAAACGATATATACTGTTGTGTGCATTTCTCGAGGAAAAAAGAAAAATGTGCTAAAGTTCTTACTCCAATGTGCTGTGGTAAAACTATTGCTGGGACCAAGTGCAAGCATCATTCCTTTCCCAGTTTTCCATTTTGCAAGAAACATATGCGCAATGTTGAGGTGAACAAGAGCTCAAACTGCCATACATTGAAGAGGAAGGCTGAAGAATTTTGTAGTGGTTCAAAGAGCCATATCAACAATGATTTTCTGTTGGTGCATCCAGAAAGTTCATTGGAGATCGATCCAATGGCGTTCACTGGTGATGATGATTATGATGATGATTCTTTCTCTGCAAAGAACATATTAGGTGAAACGCTCATGCTTTCCGGTAATGATTACAATGAAATAGAGACTCTTCACCAGACAGGTTCTCCCAAATATGATAATGATCGTGATAAATACTCATGTTTTGATAATGAGAATGCTAATAAGTGTAAGATCTGCTTTGAAGAATTTTCTAATGACCAAACACTTGGCGATCATTGGATGCAAAATCATATAAAGGAAGCCCATTGGTTATTCAGAAGTTATGCTTGTGCCATTTGTTTTGATCCATTCTCTAACAAGAAGCTACTGGAATCACACGTCCAGAATAGACATCATGTGTCGTTTACTGAAAATTGCCTGCTTTTACTATGTATTCCTTGTGGTAGTCATTTTGGAAATATGGAGGAATTATGGTTGCATGTTAAGTCAGTTCACCCAGTCGAATTTAAGCTTTCAAAAGCTTCTGAGGAACTAACTTTGCCTACCAATGATGATCCTCCTATAACAATTGGGCAGGGAAATGAAGCTTCTTTGGACAATAATAATTTTGAGAACCCAAGTGGTTCGCGGAAGTTAAGTTGCAGGTTTTGTGGTTTGAAATTTGATTTACTGCCTGATCTTGGACGTCATCATCAAGCTGCTCATATGGAACGCGGTCTAGCTAGGAGGCGTTTGGCAAAGAGGGGAGTTCGTTATTATGCTCACAGACTAAAAATTGGCACACTTAGCCGTCCGAAATCCAAAAGATGTTTTAAAAAAGCATCAAATAGGATCAAAAGAAGTGCTCGAGTTAATTTGAAGAGAAGAAATCAAGCAAGAAAGTTAAATGAGACGGGGGAAACATCCATGCAACAACCACATGTAAACGAGACAACATGTATTGTTGAATTGGAAGAATCTCAATGCTTAGAAGTTGCAAATACTTTGTTTTCTAATATTCATCAAACTCAACCGCAACCTAAAGATCTTGATATTTTATCAATCGCTTGCACTGCATGCTGCAGAGACAATCTTGAAGCCTCACTGAAGGAGAAATATGGATATTTGCCAGAAAAGATCTATTTGAAGGCAGCAAAACTTTGCAGTGAGAATGAAATTGTTGTGAATTGGCATCTAGATGGGTTCATTTGTCCTAGAGGATGTAATGCATTGAATGAACAAAACCGAAAGAAAATATATGCAAATGCATCAGATCCTGCAAGTATTGAAATGAACCAAGATGAGCCTCAATCCATCATCGATTCAAAATATACAAGATTAGGATCGTCGCAGAAGGCTATAAAATTGTGCAATGACATAAGCTCTGGGATGGAATCAACTCCTGTGATTTGTGTAATGGATCTACAAATACTAGACTCTCTTTGTGAGCAAGAGCAATATTTAAATCTTCATAGACCTTGGGAGAGCTTTACTTATGTAACAAAACCGATGTTTGGTCGATTGCCAAGTCTTGACTATGAGGGTATGCAATTGAAATGCCATTGCTCATCTTCTACCTGCTGTCGTGAAACTTGTGATCATGTATACCTTTTTGATAATGATTATGATATTGCAAAAGACATATTCGGGAAATCAATGCGCGGCAAGTTTCCATATGATAACAATGGTCGAATCATATTGGAGGAAGGTTATCTTGTGTATGAGTGCAACGAAGAGTGCAAATGTGATAAAACTTGTCCAAACAGAATATTGCAGAATGGAATTCATGTTAAGTTGGAAGTTTTTAAAACAGAGAAAAAGGGATGGGGTGTAAGGGCTTGTGAGGCTATTTCGCGCGGCACATTTGTGTGTGAGTACATTGGAGAGGTTTTAGACGAGCAAGAGGCACGCAACAGACGTGAAAGATATGGAAAAGAACATTGCGATTATTTCTATGATGTTGATGCTCGTGTTAATGATATGAGTCGATTGATCGAAAGAGAGGCTCGATATGTCATTGATTCTACTAGATATGGAAATGTGTCTAGGTTCATCAATAACAGCTGTTCACCTAATCTTGTGAATTACCAAGTTCTTGTAGAGAGTATGGATTGTAAACGTTCACATATCGGTCTTTACGCAAGTCAAGATATTGCTAAGGGTGATGAATTAACCTACAATTATCACTATGAGCTTGTGGATGGAGAAGGATCTCCTTGTCTGTGTGGATCTTCGAAGTGCAGGAATCGCTTGTACTAG 3762 0.3846 MVMFPCVQNTHFEELLCVENRQEDILSDDSLQDIVGEDSSSEDQMNPSGHKRFEQITADKFQGETSQNNRDEVDEPVAVWFKWEGKWNAGIKCAMADWPLSIVKAKPTHVDEQSKCFVIFSPETRSFSWVDMLLVQSIDKFPQPIAYKTYQEGLQMVQDLGIARQFIMQKLAVEMLYMVDQLHLNALKEDYRNAMVWKQFAMEASRCQHYSDLGRMVQRLQKSIMQQYIKDNWKVHSSESWDERCQSSNSAEIIEQLQEELFDSILWNDVHTLRDAPTQQKLDFERKTGNHDVMKWFSTFISFSSNSSTHQHSFSNDGLHQASLQDGSKRPKLNVRRANTFSRQEGIVEVPVETALPSQLISPLSKVAVHPVDSEMMFNNGTISRYVNEMDIQISVEPDTKDDAEYRRCQAYIEAKGRQCVRMAIGNDIYCCVHFSRKKEKCAKVLTPMCCGKTIAGTKCKHHSFPSFPFCKKHMRNVEVNKSSNCHTLKRKAEEFCSGSKSHINNDFLLVHPESSLEIDPMAFTGDDDYDDDSFSAKNILGETLMLSGNDYNEIETLHQTGSPKYDNDRDKYSCFDNENANKCKICFEEFSNDQTLGDHWMQNHIKEAHWLFRSYACAICFDPFSNKKLLESHVQNRHHVSFTENCLLLLCIPCGSHFGNMEELWLHVKSVHPVEFKLSKASEELTLPTNDDPPITIGQGNEASLDNNNFENPSGSRKLSCRFCGLKFDLLPDLGRHHQAAHMERGLARRRLAKRGVRYYAHRLKIGTLSRPKSKRCFKKASNRIKRSARVNLKRRNQARKLNETGETSMQQPHVNETTCIVELEESQCLEVANTLFSNIHQTQPQPKDLDILSIACTACCRDNLEASLKEKYGYLPEKIYLKAAKLCSENEIVVNWHLDGFICPRGCNALNEQNRKKIYANASDPASIEMNQDEPQSIIDSKYTRLGSSQKAIKLCNDISSGMESTPVICVMDLQILDSLCEQEQYLNLHRPWESFTYVTKPMFGRLPSLDYEGMQLKCHCSSSTCCRETCDHVYLFDNDYDIAKDIFGKSMRGKFPYDNNGRIILEEGYLVYECNEECKCDKTCPNRILQNGIHVKLEVFKTEKKGWGVRACEAISRGTFVCEYIGEVLDEQEARNRRERYGKEHCDYFYDVDARVNDMSRLIEREARYVIDSTRYGNVSRFINNSCSPNLVNYQVLVESMDCKRSHIGLYASQDIAKGDELTYNYHYELVDGEGSPCLCGSSKCRNRLY* 1254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2556 1253 Gene3D SET domain 939 1235 IPR046341 -
Mtr8g2556 1253 Pfam Zinc finger C2H2-type, 3 repeats 618 744 IPR040689 -
Mtr8g2556 1253 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1253 - -
Mtr8g2556 1253 ProSiteProfiles Post-SET domain profile. 1237 1253 IPR003616 -
Mtr8g2556 1253 ProSiteProfiles Pre-SET domain profile. 1019 1095 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mtr8g2556 1253 SMART set_7 1098 1236 IPR001214 GO:0005515
Mtr8g2556 1253 ProSitePatterns Zinc finger C2H2 type domain signature. 652 673 IPR013087 -
Mtr8g2556 1253 ProSitePatterns Zinc finger C2H2 type domain signature. 584 605 IPR013087 -
Mtr8g2556 1253 SMART c2h2final6 582 605 IPR013087 -
Mtr8g2556 1253 SMART c2h2final6 616 639 IPR013087 -
Mtr8g2556 1253 SMART c2h2final6 720 743 IPR013087 -
Mtr8g2556 1253 SMART c2h2final6 650 673 IPR013087 -
Mtr8g2556 1253 ProSiteProfiles SET domain profile. 1098 1230 IPR001214 GO:0005515
Mtr8g2556 1253 Pfam SET domain 1109 1229 IPR001214 GO:0005515
Mtr8g2556 1253 ProSitePatterns Zinc finger C2H2 type domain signature. 722 743 IPR013087 -
Mtr8g2556 1253 Gene3D Classic Zinc Finger 582 640 - -
Mtr8g2556 1253 Pfam Pre-SET motif 962 1090 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mtr8g2556 1253 SMART preset_2 958 1082 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mtr8g2556 1253 PANTHER SET DOMAIN PROTEIN 1 1253 - -
Mtr8g2556 1253 SUPERFAMILY SET domain 950 1243 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2556 Mtr-Chr8 35986268 35995569 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2556 74 498 C2H2 Transcription Factor Family AT2G23740 38.380 1.73e-86 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Mtr8g2556 Pre-SET 1.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2556 - - mtr:MTR_8g078490 2573.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2556 8 35986268 35995569 Mtr8g2556 8 35986268 35995569 ECH